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Isoform-level network modeling software tools | Protein interaction data analysis

Protein-protein interactions (PPIs) are key to understanding diverse cellular processes and disease mechanisms. However, current PPI databases only provide low-resolution knowledge of PPIs, in the sense that "proteins" of currently known PPIs generally refer to "genes." It is known that alternative splicing often impacts PPI by either directly affecting protein interacting domains, or by indirectly impacting other domains, which, in turn, impacts the PPI binding. Thus, proteins translated from different isoforms of the same gene can have different interaction partners.

Source text:
(Tseng et al., 2015) IIIDB: a database for isoform-isoform interactions and isoform network modules. BMC Genomics.

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