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Isoform-level network modeling software tools | Pathway analysis

Protein-protein interactions (PPIs) are key to understanding diverse cellular processes and disease mechanisms. However, current PPI databases only provide low-resolution knowledge of PPIs, in the sense that "proteins" of currently known PPIs…
SpliceNet
Desktop

SpliceNet

A method to infer isoform-specific co-expression networks from exon-level…

A method to infer isoform-specific co-expression networks from exon-level RNA-Seq data, using large dimensional trace. SpliceNet goes beyond differentially expressed genes and infers splicing isoform…

IIIDB
Dataset

IIIDB

Nowadays, many protein-protein interaction (PPI) databases are available, but…

Nowadays, many protein-protein interaction (PPI) databases are available, but the isoform level PPI prediction database has not been seen yet. IIIDB is a database for isoform-isoform interactions and…

Isoform Network
Web

Isoform Network

A rich genome-wide resource of mouse networks at the isoform level, which was…

A rich genome-wide resource of mouse networks at the isoform level, which was generated using a unique framework that was originally developed to infer isoform functions. This network was built…

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