IsoformResolver specifications

Information


Unique identifier OMICS_20703
Name IsoformResolver
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some validated peptide spectrum matches.
Input format FASTA or EMBL DAT
Operating system Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Natalie Ahn

Publication for IsoformResolver

IsoformResolver citation

library_books

Ubiquitin ligase TRIM3 controls hippocampal plasticity and learning by regulating synaptic γ actin levels

2015
PMCID: 4639863
PMID: 26527743
DOI: 10.1083/jcb.201506048

[…] ypsin-specificity and alkylation of cysteine residues by iodoacetamide. For each spectrum, the best-scoring peptide sequence was selected as spectrum annotation. Protein inference was performed using IsoformResolver software () aiming for consistent protein assignment of peptides across experiments. False discovery rates (FDRs) for peptide and protein identification were established using Mayu (). […]

IsoformResolver institution(s)
Department of Chemistry and Biochemistry and Howard Hughes Medical Institute, University of Colorado, Boulder, Colorado, USA
IsoformResolver funding source(s)
Supported by an NRSA Molecular Biophysics Predoctoral Training Grant GM065103, NIH R01 CA118972, and NIH R01 CA126240.

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