IsoLasso pipeline

IsoLasso specifications

Information


Unique identifier OMICS_01320
Name IsoLasso
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 2.6.1
Stability Stable
Requirements SAMtools, Libgsl-dev, Libcgal-dev
Source code URL http://alumni.cs.ucr.edu/~liw/isolasso-2.6.1.tar.gz
Maintained Yes

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Publication for IsoLasso

IsoLasso IN pipeline

2013
PMCID: 3851429
PMID: 24268045
DOI: 10.1186/1471-2105-14-S14-S4

[…] illustrative purposes, output from cufflinks [28], is directly integrated into a tool pipeline. however, following our tool and file independent design approach, other reconstruction tools such as isolasso[29] or trip[30], and/or other quantification tools isoem[31] or rsem[32] may be utilized. finally, multiple myeloma and its associated cancer biology knowledge is utilized and structured […]

IsoLasso institution(s)
Department of Computer Science and Engineering, University of California, Riverside, CA, USA; School of Life Science and Technology, Tongji University, Shanghai, China; School of Information Science and Technology, Tsinghua University, Beijing, China
IsoLasso funding source(s)
Funded by the NSF (grant IIS-0711129) and the NIH (grant AI078885).

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