IBDWS specifications

Information


Unique identifier OMICS_16713
Name IBDWS
Alternative name Isolation by Distance Web Service
Interface Web user interface
Restrictions to use None
Input data Some genetic data with or without corresponding geographical information.
Input format TXT,HTML
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Jeffrey Jensen <>
  • person_outline Andrew Bonohak <>
  • person_outline Scott Kelley <>

Information


Unique identifier OMICS_16713
Name IBDWS
Alternative name Isolation by Distance Web Service
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Some genetic data with or without corresponding geographical information.
Input format TXT,HTML
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Medium
Version 2.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Jeffrey Jensen <>
  • person_outline Andrew Bonohak <>
  • person_outline Scott Kelley <>

IBDWS article

IBDWS citations

 (5)
2018
PMCID: 5821360

[…] genotypes and mtdna cr sequences, respectively. we tested for correlations between matrices of genetic distance (fst or φst) and geographic distance using a mantel test as implemented in the package ibdws v. 3.2.3 (http://ibdws.sdsu.edu/~ibdws/) [57], with 1000 random permutations to test for significance., the isolation-with-migration model (im) [58] was used to examine the relative […]

2018
PMCID: 5762629

[…] using weir & cockerham’s θ 82, and implemented in arlequin. pairwise f st values were used to assess whether a pattern of isolation-by-distance (ibd) exists between populations, using the isolation by distance web service v3.2383. this application implements mantel test84 with 10,000 randomizations, for matrix correlation between genetic distance (f st values) and geographic distance […]

2016
PMCID: 4758651

[…] pairwise genetics using distance (fst/(1-fst)) [41] and pairwise geographical distances with 10,000 randomizations and a reduced major axis regression (rma) to calculate the slope in the program ibdws version 3.23 [42]., the distributions of the expected heterozygosity for each locus and population under both the infinite allele model (iam) and the stepwise mutation model (smm) […]

2014
PMCID: 4192554

[…] software was used for collating results generated with structure (earl and vonholdt 2012). mantel test was performed using the fst values and the geographic distances between the populations (isolation by distance web service, version 3.23) (jensen et al. 2005)., the average lead concentration was highest in livers of bank voles from pol (0.77 mg/kg dw) (table 1). it was ≤3 times greater […]

2013
PMCID: 3767659

[…] of spearman rank correlation coefficient (two-tailed) between genetic differentiation and geographical distance was assessed using mantel tests with 10,000 permutations (genepop on the web) or in ibdws (isolation by distance web service) v.3.16 [73]., haplotype frequencies and reduction were estimated using a median joining (mj) network constructed with network 4.5 [74] with default […]

IBDWS institution(s)
High Tech High, San Diego, CA, USA; Department of Biology, San Diego State University, San Diego, CA, USA

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