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IsomiR detection (small RNA-seq analysis)

Variants of microRNAs, called isomiRs, are commonly reported in small RNA sequencing. It is now possible to discern the overall complexity of miRNA populations that participate in gene regulatory networks.

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YM500
Web

YM500

Provides small RNA (smRNA) sequencing in human cancer research. YM500 not only…

Provides small RNA (smRNA) sequencing in human cancer research. YM500 not only focuses on miRNAs but also on other functional small non-coding RNAs (sncRNAs), such as PIWI-interacting RNAs (piRNAs),…

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SeqBuster
Desktop

SeqBuster

Permits users to analyse small RNA data from Illumina sequencing. SeqBuster is…

Permits users to analyse small RNA data from Illumina sequencing. SeqBuster is a web-based bioinformatic tool providing an automatized pre-analysis for sequence annotation. This software offers a…

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DeAnnIso
Web

DeAnnIso Detection and Annotation of IsomiRs

An online tool for detection and annotation of isomiRs from small RNA…

An online tool for detection and annotation of isomiRs from small RNA sequencing data. DeAnnIso can detect all the isomiRs in an uploaded sample, and can extract the differentially expressing isomiRs…

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miRspring
Desktop

miRspring

Allows to share and analyze aligned small RNA sequencing data. miRspring is a…

Allows to share and analyze aligned small RNA sequencing data. miRspring is a software document that aims to provide portability and a universal method to extract miRNA processing information from…

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isomiR2Function
Desktop

isomiR2Function

Identifies templated and non-templated 5’-isomiRs and 3’-isomiRs.…

Identifies templated and non-templated 5’-isomiRs and 3’-isomiRs. isomiR2Function allows the expression quantification using empirical bayes hierarchal model (EBSeq) and/or negative binomial…

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miRMOD
Desktop

miRMOD

Identifies and analyses non-templated nucleotide additions and trimming at both…

Identifies and analyses non-templated nucleotide additions and trimming at both the termini of the miRNA sequences in sRNA next generation sequencing (NGS) data. miRMOD is a Windows-based standalone…

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isomiRID
Desktop

isomiRID

Standardizes and automatizes the search for miRNAs isoforms in high-throughput…

Standardizes and automatizes the search for miRNAs isoforms in high-throughput small RNA sequencing libraries. isomiRID provides a tool to automate, standardize and simplify the searches for isomiRs…

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isomiRex
Web

isomiRex

An effective platform for the identification and the visualization of miRNAs…

An effective platform for the identification and the visualization of miRNAs and their cognate isomiRs using NGS datasets spanning 193 species (including plants, animals and viruses using miRbase…

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isomiR-SEA
Desktop

isomiR-SEA isomiR Seed Extension Aligner

Produces accurate miRNAs expression level quantification and both isomiRs and…

Produces accurate miRNAs expression level quantification and both isomiRs and miRNA-mRNA interaction sites precise classification. isomiR-SEA exploits a miRNA specific alignment algorithm that is…

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miR-isomiRExp
Desktop

miR-isomiRExp

A web platform to analyze expression pattern of miRNA at the miRNA/isomiR…

A web platform to analyze expression pattern of miRNA at the miRNA/isomiR levels. miR-isomiRExp is based on the biological characteristics of miRNA and isomiR, it provides insights into tracking…

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miRquant
Desktop

miRquant

Detects miRNAs from smRNA-seq data, with an emphasis on separately annotating…

Detects miRNAs from smRNA-seq data, with an emphasis on separately annotating and quantifying functionally-distinct isoforms of canonical miRNAs, termed isomiRs. miRquant provides detailed…

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IsomiRage
Desktop

IsomiRage

A workflow for the characterization and analysis of miRNAs and their variants…

A workflow for the characterization and analysis of miRNAs and their variants in next-generation sequencing datasets. IsomiRage permits the deconvolution of miRNA heterogeneity and could be used to…

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