isomiR-SEA specifications


Unique identifier OMICS_11424
Name isomiR-SEA
Alternative name isomiR Seed Extension Aligner
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Two input files have to be provided to isomiR-SEA tool for the detection of miRNAs expression levels. The first file contains miRNAs reference sequences while the second stores the input tags table of counts on which the analysis has to be carried out. The second input file is the standard tags counts file.
Output data isomiR-SEA provides as output two main types of files: The first contains information organized from a tag point of view whereas the second reports results sorted according to the specific miRNA. The proper format of both of them allows to easily process data for i) performing further statistical analyses, ii) filtering specific isomiRs, iii) implementing an isomiR-weighted expression analysis of the detected miRNAs.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++
Computer skills Advanced
Version 1.60
Stability Stable
Maintained Yes



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  • person_outline Gianvito Urgese <>

Publication for isomiR Seed Extension Aligner

isomiR-SEA institution(s)
Department of Control and Computer Engineering DAUIN, Politecnico di Torino, Turin, Italy

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