isomiR-SEA specifications

Unique identifier:
Software type:
Restrictions to use:
Academic or non-commercial use
Output data:
isomiR-SEA provides as output two main types of files: The first contains information organized from a tag point of view whereas the second reports results sorted according to the specific miRNA. The proper format of both of them allows to easily process data for i) performing further statistical analyses, ii) filtering specific isomiRs, iii) implementing an isomiR-weighted expression analysis of the detected miRNAs.
Programming languages:
C, C++
isomiR Seed Extension Aligner
Command line interface
Input data:
Two input files have to be provided to isomiR-SEA tool for the detection of miRNAs expression levels. The first file contains miRNAs reference sequences while the second stores the input tags table of counts on which the analysis has to be carried out. The second input file is the standard tags counts file.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:


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isomiR-SEA distribution


isomiR-SEA support


  • Gianvito Urgese <>


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Department of Control and Computer Engineering DAUIN, Politecnico di Torino, Turin, Italy

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