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isomiRID

Standardizes and automatizes the search for miRNAs isoforms in high-throughput small RNA sequencing libraries. isomiRID provides a tool to automate, standardize and simplify the searches for isomiRs and non-templated nucleotides in 3′ and 5′ miRNA ends, using as input single or multiple sequencing data files in a comparative way. The output files produced from this workflow are understandable tab delimited.txt files, which can be easily imported for spreadsheet or statistical suits, as R package. Also, the aligned output provides a broad view of particular miRNAs and the abundance of their isomiRs sequences in different sequencing datasets.

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isomiRID forum

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isomiRID classification

isomiRID specifications

Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Python
Version:
0.53
Maintained:
No
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

isomiRID distribution

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Publications

Institution(s)

Genetics and Molecular Biology Graduation Program, Universidade Federal do Rio Grande do Sul – UFRGS,Predio, Porto Alegre, Brasil

Link to literature

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