Isotope Pattern Calculator specifications

Information


Unique identifier OMICS_02414
Name Isotope Pattern Calculator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Isotope Pattern Calculator in publications

 (7)
PMCID: 5359385
PMID: 28271226
DOI: 10.1007/s00216-017-0235-8

[…] performed with an esi calibration mixture (agilent)., data interpretation was done with dataanalysis 4.0 (bruker, bremen, germany). theoretical isotopic distributions were calculated with compass isotope pattern calculator (bruker, bremen, germany). for quantification with the “all peaks” strategy, the four (man5) to seven (g4s4f) highest isotopic peaks (resulting in at least 96.5% […]

PMCID: 4944393
PMID: 27471506
DOI: 10.3389/fpls.2016.00988

[…] search parameters as described by . the false discovery rate (fdr) thresholds for protein and peptide were specified at 1%, and those with confidence levels higher than 95% were considered. isotope pattern calculator was implemented to quantify the relative intensities of isotope peaks with paragontm algorithm. the mass spectrometry proteomics data have been deposited […]

PMCID: 3720290
PMID: 23837681
DOI: 10.1186/1471-2105-14-218

[…] [], gepasi [] or fiatflux [] (here fluxes are predicted after the isotopologue data have been processed). there are two software solutions available for isotopomer data processing, envelop [] and isotope pattern calculator [], but none uses binomial expression for data extension. the implementation of brauman’s least square method with the inclusion of binomial expression allows rapid […]

PMCID: 3650664
PMID: 23661174
DOI: 10.1038/srep01827

[…] cluster. therefore for each isotopic label form the first four peaks were used for calculated the intensity. the influence of overlapped isotope clusters was also considered. a software tool named isotope pattern calculator (ipc) download from http://omics.pnl.gov/software/ipc.php was used to calculate the relative intensities of isotope peaks and the overlapped portion were deducted. in a ms1 […]

PMCID: 3131286
PMID: 21750686
DOI: 10.1371/journal.pgen.1002169

[…] extracting the corresponding peak intensities (extracted from the resulting rov-files). the modified peptide sequences were used to calculate the theoretical isotope peak distribution using the ms-isotope pattern calculator (http://prospector.ucsf.edu). for both variants (i.e., in vivo nα-acetylated (peak at m/z) and in vitro 13c2d3-nα-acetylated (peak at m/z+5 da)), the predicted intensity […]


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