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Isotopica specifications

Information


Unique identifier OMICS_22781
Name Isotopica
Software type Application/Script
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained Yes

Maintainer


  • person_outline Jorge Fernandez-de-Cossio <>

Information


Unique identifier OMICS_22781
Name Isotopica
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C#, C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jorge Fernandez-de-Cossio <>

Publication for Isotopica

Isotopica in publications

 (3)
PMCID: 4630370
PMID: 26576414
DOI: 10.1155/2015/124082

[…] were specified as fixed modifications. to accept a peptide hit as positive we considered a false discovery rate (fdr) of 3% based on the target-decoy strategy []., quantification was achieved using isotopica software [, ]. the software enables the relative peptide quantification based on the detailed analysis of the observed isotopic ion distribution. the software calculated the best ratio […]

PMCID: 3775746
PMID: 24069425
DOI: 10.1371/journal.pone.0075503

[…] soils. the upper soils reflected the very isotopically negative and relatively large rain event that fell on the site just prior to the collections. the deeper soil water in the ws plot became more isotopica, such lly depleted, suggesting that the large rain even had penetrated deeper in soil profile, while in the c, w, and s plots, the deeper soils became more isotopically enriched […]

PMCID: 3433913
PMID: 22261724
DOI: 10.1074/mcp.M111.015339

[…] with data collection and analysis. we thank j. jewett, t. iavarone, and l. kelly for critical reading, manuscript editing, and discussion. images of simulated peptide envelopes were created with isotopica (http://coco.protein.osaka-u.ac.jp/isotopica/), and the n-glycosylation consensus site frequency plot was generated with weblogo […]


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Isotopica institution(s)
Center for Genetic Engineering and Biotechnology, Havana, Cuba; Institute for Protein Research, Osaka University, Osaka, Japan; Department of Pharmacology, National Cardiovascular Center Research Institute, Osaka, Japan
Isotopica funding source(s)
Supported by the research and development funds of the Center for Genetic Engineering and Biotechnology, the Special Coordination Fund for the Promotion of Science and Technology (Intellectual Infrastructure Research and Development for Its Comprehensive Promotion System) and Grants-in-Aid for Scientific Research (No. 14380293) from the Ministry of Education, Culture, Sports, Science and Technology of Japan.

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