IsoTree specifications


Unique identifier OMICS_31912
Name IsoTree
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some RNA-Seq reads.
Input format FASTA
Output data A file that contains all the possible transcripts assembled.
Output format FASTA
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes




No version available



  • person_outline Jin Zhao
  • person_outline Haodi Feng

Publication for IsoTree

IsoTree institution(s)
School of Computer Science and Technology, Shandong University, Jinan, China; School of Medicine Center for Computational Biology and Bioinformatics, Department of Medical and Molecular Genetics, Indiana University, IN, USA; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA
IsoTree funding source(s)
Supported by National Natural Science Foundation of China under No. 61672325 and No. 61472222.

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