iSRAP specifications

Information


Unique identifier OMICS_10681
Name iSRAP
Alternative name integrated Small RNA Analysis Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data FASTQ/BAM
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Andrew Hill

Publication for integrated Small RNA Analysis Pipeline

iSRAP citation

library_books

Placental trophoblast debris mediated feto maternal signalling via small RNA delivery: implications for preeclampsia

2017
Sci Rep
PMCID: 5665858
PMID: 29089639
DOI: 10.1038/s41598-017-14180-8

[…] the presence of other small RNA fragments. Sequences were then annotated to human genome, version 38, to identify miRNA and fragments from other small RNAs including tRNA, snoRNA and rRNA, using the iSRAP small RNA pipeline. Two thousand six hundred and forty-six non-miRNA small RNA fragments and 1278 mature miRNAs were identified across all of the samples. The small RNA sequence composition show […]

iSRAP institution(s)
Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia; Victorian Life Sciences Computation Initiative (VLSCI), The University of Melbourne, Melbourne, VIC, Australia; Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, Australia
iSRAP funding source(s)
This work was supported by the Australian Research Council (FT100100560) and the National Health and Medical Research Council (628946).

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