iSS-PseDNC specifications


Unique identifier OMICS_20378
Name iSS-PseDNC
Alternative name Identifying Splice site Pseudo DiNucleotide Composition


This tool is not maintained anymore.

Publication for Identifying Splice site Pseudo DiNucleotide Composition

iSS-PseDNC citation


iSS PC: Identifying Splicing Sites via Physical Chemical Properties Using Deep Sparse Auto Encoder

Sci Rep
PMCID: 5557945
PMID: 28811565
DOI: 10.1038/s41598-017-08523-8

[…] s situation, the computational splice-site analysis tools based on the WEB took up, such as NetGene, , SplicePredictor, GeneSplicer and SplicePort. Recently, Wei Chen et al. built a prediction model “iSS-PseDNC” which incorporated six DNA local structural properties into pseudo dinucleotide composition to identify splice donor and acceptor sites. In 2016, M Iqbal et al. used PseTNC and PseTetraNC […]

iSS-PseDNC institution(s)
Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan, China; Gordon Life Science Institute, Boston, MA, USA; School of Public Health, Hebei United University, Tangshan, China; Key Laboratory for Neuro-Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, China; Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia
iSS-PseDNC funding source(s)
Supported by the National Nature Scientific Foundation of China (nos. 61100092 and 61202256) and the Nature Scientific Foundation of Hebei Province (no. C2013209105).

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