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Protocols

IT3F specifications

Information


Unique identifier OMICS_24015
Name IT3F
Alternative name Interspecies Transcription Factor Function Finder
Interface Web user interface
Restrictions to use None
Input data A query sequence.
Input format FASTA
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Paul Bailey

Publication for Interspecies Transcription Factor Function Finder

IT3F citation

call_split

dsRNA silencing of an R2R3 MYB transcription factor affects flower cell shape in a Dendrobium hybrid

2015
BMC Plant Biol
PMCID: 4542095
PMID: 26260631
DOI: 10.1186/s12870-015-0577-3
call_split See protocol

[…] partial amino acid sequences were aligned with DwMYB1 [GenBank: AF485892.1] [] using EMBL-EBI ClustalW2 (http://www.ebi.ac.uk/Tools/msa/clustalw2/). Phylogenetic analysis was performed using IT3F: An Interspecies Transcription Factor Function Finder for Plants (http://jicbio.bbsrc.ac.uk/IT3F) with the 32 isolated putative partial protein sequences and other plant MYB superfamily R2R3 members from […]


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IT3F institution(s)
Department of Computational and Systems Biology, John Innes Centre, Norwich Research Park, Colney, Norwich, UK; Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Colney, Norwich, UK
IT3F funding source(s)
Supported by the John Innes Centre for a distance-learning M.Sc. course in Bioinformatics (University of Manchester).

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