ITALICS specifications

Information


Unique identifier OMICS_02064
Name ITALICS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.40.0
Stability Stable
Requirements
stats, R(>=2.0.0), GLAD, DBI, affxparser, oligo, oligoClasses, pd.mapping250k.sty, pd.mapping250k.nsp, ITALICSData, pd.mapping50k.xba240, pd.mapping50k.hind240
Maintained Yes

Versioning


Add your version

Documentation


Publication for ITALICS

ITALICS in publications

 (3)
PMCID: 2891634
PMID: 20492709
DOI: 10.1186/1471-2407-10-222

[…] and hybridized according to manufacturer's recommendations., intensity signals data from genechip® human mapping 50 k xba array or genome-wide human snp array 6.0 were normalized and analyzed using italics (iterative and alternative normalization and copy number calling for affymetrix single nucleotide polymorphism [snp] arrays) algorithm [] or partek genomic suite (partek inc., st louis, mo, […]

PMCID: 2756404
PMID: 19285540
DOI: 10.1016/j.bbcan.2009.03.001

[…] the length of pcr fragments and gc content, and uses the average of at least 5 “best-fit” normal samples that show the least variation between arrays as a control . a recently published algorithm, italics, addresses the problems of pcr kinetics plus additional sources of nonrelevant variation between the probe quartet intensities, such as systematic variation and spatial effects, and uses […]

PMCID: 2656897
PMID: 19055754
DOI: 10.1186/bcr2204

[…] at a 1:500 dilution (lab vision, interchim, clichy, france)., dna and rna were purified as described []. for genomic arrays, affymetrix genechip human mapping 100 k was normalised and analysed using italics (iterative and alternative normalization and copy number calling for affymetrix snp arrays) algorithm []. the segmentation of the genomic profile was performed using glad (gain and loss […]


To access a full list of publications, you will need to upgrade to our premium service.

ITALICS institution(s)
Institut Curie, Service de Bioinformatique, INSERM, U900, CNRS UMR144, Institut Curie, Translational Research Department, Paris, France

ITALICS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ITALICS