ITD assembler specifications

Information


Unique identifier OMICS_11588
Name ITD assembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A bam file.
Input format BAM
Output data .bed file
Output format BED
Operating system Unix/Linux
Programming languages C, Haskell, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
SAMtools, BAMtools, Blastn, IntersectBed, PHRAP, GHC
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline vin Rustagi <>

Publication for ITD assembler

ITD assembler institution(s)
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA; Department of Statistics, Rice University, Houston, TX, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; Department of Dermatology, Xiangya Hospital, Central South University, Hunan, China; Department of Pediatrics/Hematology-Oncology, Texas Children’s Hospital, Houston, TX, USA
ITD assembler funding source(s)
This work was supported by the Cancer Prevention and Research Institute of Texas grant [RP10189]; the National Human Genome Research Institute grant [U54 HG003273].

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