iCORN specifications

Unique identifier:
OMICS_15113
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, FASTQ
Biological technology:
Illumina, Pacific Biosciences
Programming languages:
Perl
Version:
2.0
Requirements:
GATK, SMALT, samtools, SNP-o-AMTIC
Maintained:
Yes
Name:
Iterative Correction of Reference Nucleotides
Interface:
Command line interface
Input data:
Reference Sequence (FASTA), reads (FASTQ), information of short reads.
Output data:
The called SNP and indel errors corrected in the genome sequence.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Beta
Source code URL:
ftp://ftp.sanger.ac.uk/pub4/resources/software/pagit/ICORN2/icorn2.V0.95.tgz

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iCORN support

Documentation

Maintainer

  • Thomas Otto <>

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Publications

Institution(s)

Parasite Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK; Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK

Funding source(s)

This work was supported by the European Union 6th Framework Program grant to the BioMalPar Consortium (grant number LSHP-LT-2004-503578) and the Wellcome Trust Sanger Institute.

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