Iterative Deconvolve 3D statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Image deconvolution chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Iterative Deconvolve 3D specifications

Information


Unique identifier OMICS_25616
Name Iterative Deconvolve 3D
Alternative name DAMAS3
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Some image, single-slice PSF and a multiple-slice image stack.
Operating system Windows
Programming languages Java
Computer skills Medium
Stability Stable
Source code URL http://www.optinav.info/download/Iterative_Deconvolve_3D.java
Maintained Yes

Download


Versioning


Add your version

Additional information


https://imagej.net/Iterative_Deconvolve_3D

Publication for Iterative Deconvolve 3D

Iterative Deconvolve 3D in publications

 (20)
PMCID: 5732259
PMID: 29311825
DOI: 10.3389/fncel.2017.00389

[…] were averaged. quantitative analysis was performed in ∼1000 randomly selected subfields measuring about 25 μm × 25 μm from the 512 pixels × 512 pixels images. images were deconvolved using iterative deconvolve 3d plugin of imagej software (v. 1.48, nih) with the same parameters for all images of both lev-treated and control group; number and size of puncta were measured […]

PMCID: 5587616
PMID: 28755208
DOI: 10.1007/s00401-017-1751-5

[…] to process images for quantification of synaptic profiles, first z-stacks were deconvolved using the wpl deconvolution algorithm in the parallel iterative deconvolution imagej plugin [] based on the iterative deconvolve 3d algorithm [] utilizing a theoretical 3d point spread function generated in psf lab []. image stacks were then filtered with a 3 × 3 median filter and thresholded using […]

PMCID: 5389855
PMID: 28355222
DOI: 10.1371/journal.pgen.1006695

[…] image were maximized without over-saturation to emphasize mitochondrial content regardless of gfp expression, import, and folding levels. for imaging processing, z-stacks were deconvoluted using the iterative deconvolve 3d plugin in fiji and 5 image slices were projected using max intensity projection. mitochondrial content was analyzed by thresholding the 5 image slice projections of different […]

PMCID: 5343488
PMID: 28262662
DOI: 10.1038/ncomms14536

[…] solution and washed with pbs. sections have been mounted on coated super-adhesive glass slides and covered with mowiol prior to confocal imaging. images have been deconvoluted with imagej plugin iterative deconvolve 3d., paraformaldehyde fixed neurons were incubated with a polyclonal primary anti-shrm4 diluted (1:100) in pbs containing 5% normal goat serum, 0.1% saponin for 1 h; […]

PMCID: 5026357
PMID: 27637067
DOI: 10.1371/journal.pone.0163177

[…] samples were analysed by sds-page and coomassie staining., fluorescence microscopy was performed on an olympus ix-81 inverted microscope with 100x and 150x oil objectives and data deconvolved using iterative deconvolve 3d plugin in fiji software. to visualize formation of actin filaments in vitro, a reaction mix of 3 μm rabbit muscle actin with 0.4 μm alexa 488 labelled actin and 0.3 μm […]


To access a full list of publications, you will need to upgrade to our premium service.

Iterative Deconvolve 3D reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Iterative Deconvolve 3D