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ITFP specifications

Information


Unique identifier OMICS_07385
Name ITFP
Alternative name Integrated Transcription Factor Platform
Restrictions to use None
Maintained No

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Publications for Integrated Transcription Factor Platform

ITFP citations

 (3)
library_books

Investigating the mechanism of hepatocellular carcinoma progression by constructing genetic and epigenetic networks using NGS data identification and big database mining method

2016
Oncotarget
PMCID: 5346727
PMID: 27821810
DOI: 10.18632/oncotarget.13100

[…] Base [] (for miRNA-gene regulatory associations), Gene Set Enrichment Analysis (GSEA) [], Human Transcription Regulation Interaction database (HTRIdb) [] and integrated transcription factor platform (ITFP) [] (for TF-gene regulatory associations), and Biological General Repository for Interaction Datasets (BioGRID) [] (for protein-protein interactions) databases, in order to construct candidate GE […]

library_books

A Genome Scale Investigation of How Sequence, Function, and Tree Based Gene Properties Influence Phylogenetic Inference

2016
Genome Biol Evol
PMCID: 5010910
PMID: 27492233
DOI: 10.1093/gbe/evw179

[…] number of exons and protein isoforms) through Ensembl BioMart (www.ensembl.org/biomart; last accessed on February 17, 2015) and other curated databases such as PaxDb (), BioGRID (), Yeastract () and ITFP (). For tree-based properties, we used custom Perl scripts to estimate their values from the estimated ML gene tree. […]

library_books

A Cytosolic Network Suppressing Mitochondria Mediated Proteostatic Stress and Cell Death

2015
Nature
PMCID: 4582408
PMID: 26192197
DOI: 10.1038/nature14859

[…] 3xHA tag was added to the C-terminus of Gis2 and Nog2 by integration of a PCR product amplifying from a 3HA-KanMX6 cassette. The primers used for tagging GIS2 were GIS2-3HA-KAN-ITFP (5′-taacgaaactggccatatttccaaggattgtccaaaggctCGGATCCCCGGGTTAATTAA-3′) and GIS2-3HA-KAN-ITRP (5′-taagtgattgttcctttgtttttttcagtggatgtttcacGAATTCGAGCTCGTTTAAAC-3′). The GIS2 sequence was shown in low […]

Citations

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ITFP institution(s)
School of Life Sciences, Fudan University, Shanghai, China

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