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ITFP specifications


Unique identifier OMICS_07385
Alternative name Integrated Transcription Factor Platform
Restrictions to use None
Maintained No


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Publications for Integrated Transcription Factor Platform

ITFP citations


Investigating the mechanism of hepatocellular carcinoma progression by constructing genetic and epigenetic networks using NGS data identification and big database mining method

PMCID: 5346727
PMID: 27821810
DOI: 10.18632/oncotarget.13100

[…] Base [] (for miRNA-gene regulatory associations), Gene Set Enrichment Analysis (GSEA) [], Human Transcription Regulation Interaction database (HTRIdb) [] and integrated transcription factor platform (ITFP) [] (for TF-gene regulatory associations), and Biological General Repository for Interaction Datasets (BioGRID) [] (for protein-protein interactions) databases, in order to construct candidate GE […]


A Genome Scale Investigation of How Sequence, Function, and Tree Based Gene Properties Influence Phylogenetic Inference

Genome Biol Evol
PMCID: 5010910
PMID: 27492233
DOI: 10.1093/gbe/evw179

[…] number of exons and protein isoforms) through Ensembl BioMart (; last accessed on February 17, 2015) and other curated databases such as PaxDb (), BioGRID (), Yeastract () and ITFP (). For tree-based properties, we used custom Perl scripts to estimate their values from the estimated ML gene tree. […]


A Cytosolic Network Suppressing Mitochondria Mediated Proteostatic Stress and Cell Death

PMCID: 4582408
PMID: 26192197
DOI: 10.1038/nature14859

[…] 3xHA tag was added to the C-terminus of Gis2 and Nog2 by integration of a PCR product amplifying from a 3HA-KanMX6 cassette. The primers used for tagging GIS2 were GIS2-3HA-KAN-ITFP (5′-taacgaaactggccatatttccaaggattgtccaaaggctCGGATCCCCGGGTTAATTAA-3′) and GIS2-3HA-KAN-ITRP (5′-taagtgattgttcctttgtttttttcagtggatgtttcacGAATTCGAGCTCGTTTAAAC-3′). The GIS2 sequence was shown in low […]


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ITFP institution(s)
School of Life Sciences, Fudan University, Shanghai, China

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