ITIS statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool ITIS

Tool usage distribution map

This map represents all the scientific publications referring to ITIS per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Transposable element prediction chevron_right
Want to access the full stats & trends on this tool?


ITIS specifications


Unique identifier OMICS_07690
Alternative name Identification of Transposon Insertion Sites
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No


No version available

Publication for Identification of Transposon Insertion Sites

ITIS citations


Population and clinical genetics of human transposable elements in the (post) genomic era

Mob Genet Elements
PMCID: 5305044
PMID: 28228978
DOI: 10.1080/2159256X.2017.1280116
call_split See protocol

[…] l set of 21 programs down to 7 programs, which we then evaluated using simulated and actual human genome sequences.The final 7 programs that we evaluated were: MELT, Mobster, RetroSeq, Tangram, TEMP, ITIS and T-lex239 (). For each of these programs, we provided a detailed set of notes in support of their installation and use, including the exact commands and parameters that are required for their […]


Genome Wide Comparison of Magnaporthe Species Reveals a Host Specific Pattern of Secretory Proteins and Transposable Elements

PLoS One
PMCID: 5033516
PMID: 27658241
DOI: 10.1371/journal.pone.0162458

[…] The genome-wide insertion sites of transposable elements (TEs) were inferred using the ITIS tool []. The repeat insertion sites were predicted based on the 70–15 gene model as a reference. The copy number of each repeat element and the number of TE insertions are summarized in . The num […]

Want to access the full list of citations?
ITIS institution(s)
Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences, Beijing, China

ITIS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ITIS