ITIS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ITIS
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Tool usage distribution map

This map represents all the scientific publications referring to ITIS per scientific context
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Protocols

ITIS specifications

Information


Unique identifier OMICS_07690
Name ITIS
Alternative name Identification of Transposon Insertion Sites
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

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Publication for Identification of Transposon Insertion Sites

ITIS citations

 (2)
call_split

Population and clinical genetics of human transposable elements in the (post) genomic era

2017
Mob Genet Elements
PMCID: 5305044
PMID: 28228978
DOI: 10.1080/2159256X.2017.1280116
call_split See protocol

[…] l set of 21 programs down to 7 programs, which we then evaluated using simulated and actual human genome sequences.The final 7 programs that we evaluated were: MELT, Mobster, RetroSeq, Tangram, TEMP, ITIS and T-lex239 (). For each of these programs, we provided a detailed set of notes in support of their installation and use, including the exact commands and parameters that are required for their […]

library_books

Genome Wide Comparison of Magnaporthe Species Reveals a Host Specific Pattern of Secretory Proteins and Transposable Elements

2016
PLoS One
PMCID: 5033516
PMID: 27658241
DOI: 10.1371/journal.pone.0162458

[…] The genome-wide insertion sites of transposable elements (TEs) were inferred using the ITIS tool []. The repeat insertion sites were predicted based on the 70–15 gene model as a reference. The copy number of each repeat element and the number of TE insertions are summarized in . The num […]


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ITIS institution(s)
Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences, Beijing, China

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