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ITIS specifications

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Unique identifier OMICS_07690
Name ITIS
Alternative name Identification of Transposon Insertion Sites
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

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Publication for Identification of Transposon Insertion Sites

ITIS citations

 (2)
library_books

Population and clinical genetics of human transposable elements in the (post) genomic era

2017
PMCID: 5305044
PMID: 28228978
DOI: 10.1080/2159256X.2017.1280116

[…] of 21 programs down to 7 programs, which we then evaluated using simulated and actual human genome sequences., the final 7 programs that we evaluated were: melt, mobster, retroseq, tangram, temp, itis and t-lex239 (). for each of these programs, we provided a detailed set of notes in support of their installation and use, including the exact commands and parameters that are required […]

library_books

Genome Wide Comparison of Magnaporthe Species Reveals a Host Specific Pattern of Secretory Proteins and Transposable Elements

2016
PMCID: 5033516
PMID: 27658241
DOI: 10.1371/journal.pone.0162458

[…] analyzed using an in-house perl script based on 70% coverage of each repeat element. insertion sites of repeat elements, and the upstream and downstream flanking regions were identified using the identification of transposon insertion sites (itis) tool []. the supercontigs of magnaporthe oryzae strain 70–15 were used as a reference to map paired reads of magnaporthe isolates with an average […]


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ITIS institution(s)
Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences, Beijing, China

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