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ITM Probe specifications
Information
| Unique identifier | OMICS_24196 |
|---|---|
| Name | ITM Probe |
| Interface | Web user interface |
| Restrictions to use | None |
| Output data | A list of the top ranking nodes together with an image of the sub-network consisting of these nodes. |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Yi-Kuo Yu <>
Information
| Unique identifier | OMICS_24196 |
|---|---|
| Name | ITM Probe |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Python |
| Computer skills | Advanced |
| Version | 1.5.4 |
| Stability | Stable |
| Requirements |
qmbpmn
|
| Maintained | Yes |
Versioning
Add your version
Maintainer
- person_outline Yi-Kuo Yu <>
Publications for ITM Probe
Information flow in interaction networks.
ITM Probe in publications
(3)[…] similarity of diseases by gene functional network. gene functional network can provide the information flow which can be used to calculate the disease similarity. to analyze the information flow, itm probe [] is employed which included three models: absorbing, emitting and channel. each disease is a boundary node in the network, besides, each gene is a transient node., each disease […]
[…] diseases (additional file )., in this study, we designed a novel method to compute disease similarity by modelling the information flow in the comprehensive gfn. in the previous study, a tool called itm probe [] was created for analyzing information flow in the network based on random walk with damping. currently, three models involving absorbing, emitting, and channel were employed in itm […]
[…] flow analysis, a computational biology method that uses random walk algorithms to model how signals flow through large networks. one example of software that performs this type of analysis is itm probe [], which is also available as a cytoscape app []. in itm probe, the user can define source nodes (nodes that emit information, e.g., receptors) and sink nodes (target nodes that absorb […]
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