ITM Probe statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Protein-protein interaction prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ITM Probe specifications

Information


Unique identifier OMICS_24196
Name ITM Probe
Interface Web user interface
Restrictions to use None
Output data A list of the top ranking nodes together with an image of the sub-network consisting of these nodes.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yi-Kuo Yu <>

Information


Unique identifier OMICS_24196
Name ITM Probe
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.5.4
Stability Stable
Requirements
qmbpmn
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Yi-Kuo Yu <>

Publications for ITM Probe

ITM Probe in publications

 (3)
PMCID: 5907145
PMID: 29671398
DOI: 10.1186/s12859-018-2098-1

[…] similarity of diseases by gene functional network. gene functional network can provide the information flow which can be used to calculate the disease similarity. to analyze the information flow, itm probe [] is employed which included three models: absorbing, emitting and channel. each disease is a boundary node in the network, besides, each gene is a transient node., each disease […]

PMCID: 5751624
PMID: 29297338
DOI: 10.1186/s12920-017-0315-9

[…] diseases (additional¬†file¬†)., in this study, we designed a novel method to compute disease similarity by modelling the information flow in the comprehensive gfn. in the previous study, a tool called itm probe [] was created for analyzing information flow in the network based on random walk with damping. currently, three models involving absorbing, emitting, and channel were employed in itm […]

PMCID: 4818439
PMID: 27036106
DOI: 10.1186/s12711-016-0205-1

[…] flow analysis, a computational biology method that uses random walk algorithms to model how signals flow through large networks. one example of software that performs this type of analysis is itm probe [], which is also available as a cytoscape app []. in itm probe, the user can define source nodes (nodes that emit information, e.g., receptors) and sink nodes (target nodes that absorb […]


To access a full list of publications, you will need to upgrade to our premium service.

ITM Probe institution(s)
National Center for Biotechnology Information National Library of Medicine National Institutes of Health, Bethesda, MD, USA
ITM Probe funding source(s)
Supported by the Intramural Research Program of the National Library of Medicine at the National Institutes of Health.

ITM Probe reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ITM Probe