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ITScore-PR specifications

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Unique identifier OMICS_03605
Name ITScore-PR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for ITScore-PR

ITScore-PR citations

 (2)
library_books

A pair conformation dependent scoring function for evaluating 3D RNA protein complex structures

2017
PLoS One
PMCID: 5373608
PMID: 28358834
DOI: 10.1371/journal.pone.0174662

[…] In this test set, we also removed the decoy sets without near-native structures, and 64 decoy sets were remained. The success rates of 3dRPC-Score, ITScore-PR and DECK-RP on this test set are showed in . In this test set ITScore-PR performs at least 5% better than 3dRPC-Score and 3dRPC-Score better than DECK-RP. For examples, for top 1 prediction […]

library_books

Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites

2015
Front Bioeng Biotechnol
PMCID: 4460814
PMID: 26106597
DOI: 10.3389/fbioe.2015.00082

[…] ted to act as molecular switches (Van Roey et al., ). Additional computational approaches exist such as CAPRI (Lensink and Wodak, ) and MDockPP (Huang and Zou, ) that predict protein–protein docking; ITScore-PR, which uses an iterative method based on experimentally determined RNA–protein complex interactions (Huang and Zou, ); and RPI-Pred that predicts protein–RNA interactions based on sequence […]


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ITScore-PR institution(s)
Department of Physics and Astronomy, Department of Biochemistry, Dalton Cardiovascular Research Center, and Informatics Institute, University of Missouri, Columbia, MO, USA

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