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ITTACA specifications

Information


Unique identifier OMICS_04526
Name ITTACA
Alternative name Integrated Tumor Transcriptome Array and Clinical data Analysis
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for Integrated Tumor Transcriptome Array and Clinical data Analysis

ITTACA citations

 (3)
library_books

NOD2 maybe a biomarker for the survival of kidney cancer patients

2017
Oncotarget
PMCID: 5731890
PMID: 29254180
DOI: 10.18632/oncotarget.21547

[…] gene expression technologies. From TCGA, all data were obtained at the gene level (level 3). RNA-Seq counts data were log2 transformed. Then, we analyzed all the data with the help of online tools as ITTACA, KMPlot, Recurrence Online, bc-GeneExMiner, GOBO, PrognoScan and SurvExpress. We found that SurvExpress was most convenient online tool for this analysis, which is available in (http://bioinfor […]

library_books

Survival analysis tools in genomics research

2014
Hum Genomics
PMCID: 4246473
PMID: 25421963
DOI: 10.1186/s40246-014-0021-z

[…] database and analysis tools that enable single/multiple gene-based prognostic assessment include Kaplan-Meier Plotter [], PrognoScan [], GOBO [], Recurrence Online [], PROGgene [], bc-GenExMiner [], ITTACA [], SurvExpress [], and G-DOC Plus []. These resources assembled publicly or privately available datasets from GEO, ArrayExpress, TCGA, and/or private solicitation/deposition and enable surviva […]

library_books

Meta Analysis of Gene Expression Data within and Across Species

2008
Curr Genomics
PMCID: 2694560
PMID: 19516959
DOI: 10.2174/138920208786847935

[…] and often combine data from both one- and two-channel microarrays. These compendia are topic-specific, collecting all the publicly available experimental information related to the topic of interest. ITTACA [] and ONCOMINE [], for instance, focus on cancer in human, GAN [] on aging in several species. They collect already normalized datasets (ITTACA and GAN) or apply a simple scaling normalization […]

Citations

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ITTACA institution(s)
Service Bioinformatique, Institut Curie, Paris, France; Institut Curie, CNRS UMR 144, Paris, France

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