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|Alternative name||Integrated Tumor Transcriptome Array and Clinical data Analysis|
|Restrictions to use||None|
|User data submission||Not allowed|
- Homo sapiens
Publication for Integrated Tumor Transcriptome Array and Clinical data Analysis
NOD2 maybe a biomarker for the survival of kidney cancer patients
[…] gene expression technologies. From TCGA, all data were obtained at the gene level (level 3). RNA-Seq counts data were log2 transformed. Then, we analyzed all the data with the help of online tools as ITTACA, KMPlot, Recurrence Online, bc-GeneExMiner, GOBO, PrognoScan and SurvExpress. We found that SurvExpress was most convenient online tool for this analysis, which is available in (http://bioinfor […]
Survival analysis tools in genomics research
[…] database and analysis tools that enable single/multiple gene-based prognostic assessment include Kaplan-Meier Plotter , PrognoScan , GOBO , Recurrence Online , PROGgene , bc-GenExMiner , ITTACA , SurvExpress , and G-DOC Plus . These resources assembled publicly or privately available datasets from GEO, ArrayExpress, TCGA, and/or private solicitation/deposition and enable surviva […]
Meta Analysis of Gene Expression Data within and Across Species
[…] and often combine data from both one- and two-channel microarrays. These compendia are topic-specific, collecting all the publicly available experimental information related to the topic of interest. ITTACA  and ONCOMINE , for instance, focus on cancer in human, GAN  on aging in several species. They collect already normalized datasets (ITTACA and GAN) or apply a simple scaling normalization […]
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