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ITTACA specifications


Unique identifier OMICS_04526
Alternative name Integrated Tumor Transcriptome Array and Clinical data Analysis
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No


  • Primates
    • Homo sapiens


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Publication for Integrated Tumor Transcriptome Array and Clinical data Analysis

ITTACA citations


NOD2 maybe a biomarker for the survival of kidney cancer patients

PMCID: 5731890
PMID: 29254180
DOI: 10.18632/oncotarget.21547

[…] gene expression technologies. From TCGA, all data were obtained at the gene level (level 3). RNA-Seq counts data were log2 transformed. Then, we analyzed all the data with the help of online tools as ITTACA, KMPlot, Recurrence Online, bc-GeneExMiner, GOBO, PrognoScan and SurvExpress. We found that SurvExpress was most convenient online tool for this analysis, which is available in (http://bioinfor […]


Survival analysis tools in genomics research

Hum Genomics
PMCID: 4246473
PMID: 25421963
DOI: 10.1186/s40246-014-0021-z

[…] database and analysis tools that enable single/multiple gene-based prognostic assessment include Kaplan-Meier Plotter [], PrognoScan [], GOBO [], Recurrence Online [], PROGgene [], bc-GenExMiner [], ITTACA [], SurvExpress [], and G-DOC Plus []. These resources assembled publicly or privately available datasets from GEO, ArrayExpress, TCGA, and/or private solicitation/deposition and enable surviva […]


Meta Analysis of Gene Expression Data within and Across Species

Curr Genomics
PMCID: 2694560
PMID: 19516959
DOI: 10.2174/138920208786847935

[…] and often combine data from both one- and two-channel microarrays. These compendia are topic-specific, collecting all the publicly available experimental information related to the topic of interest. ITTACA [] and ONCOMINE [], for instance, focus on cancer in human, GAN [] on aging in several species. They collect already normalized datasets (ITTACA and GAN) or apply a simple scaling normalization […]


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ITTACA institution(s)
Service Bioinformatique, Institut Curie, Paris, France; Institut Curie, CNRS UMR 144, Paris, France

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