IVA pipeline

IVA specifications

Information


Unique identifier OMICS_08188
Name IVA
Alternative name Iterative Virus Assembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Martin Hunt <>

Publication for Iterative Virus Assembler

IVA IN pipeline

2017
PMCID: 5746209
PMID: 29284009
DOI: 10.1371/journal.pone.0189999

[…] a species with a coverage less than 100x were excluded in final statistical analyses., sequences were de novo assembled using iterative virus assembler (iva) [60] to generate a consensus. the hiv-1 env subdomains gp120-v1 to c5 and a part of the gp41 ectodomain (first 158pb) were analyzed separately. the gp120-c2 and c3 […]

IVA institution(s)
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK
IVA funding source(s)
This work was supported by researchers at the NIHR University College London Hospitals Biomedical Research Centre, the HICF and ICONIC grants [HICF-T5-344/WT098608], the Wellcome Trust [grant 098051], the European Union 7th framework EVIMalaR [to T.O.] and Global Health [grant number OPP1084362 to S.H.O.].

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