IVC specifications

Information


Unique identifier OMICS_05481
Name IVC
Alternative name Isaac Variant Caller
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An aligned sequencing reads. These reads must be sorted and indexed. PCR duplicate removal is recommended. IVC does its own read realignment around indels so it is not necessary to pre-process the data with any such step.
Input format BAM
Output data The output of the workflow is a single file describing all sites and indels in the genome.
Output format VCF
Biological technology Illumina
Operating system Unix/Linux
Programming languages C++
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 1.0.7
Stability Stable
Maintained No

Versioning


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Documentation


Maintainer


This tool is not maintained anymore.

Publication for Isaac Variant Caller

IVC institution(s)
Illumina United Kingdom, Chesterford Research Park, Essex, UK ; Illumina, Inc., San Diego, CA, USA

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