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izMiR

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Aims users to compare existing ab initio pre-miRNA detection tools. izMiR is a data analysis workflow allowing comparison of data sets, feature groups and classifiers. It can serve for development of new tools about pre-miRNA detection topic. This tool can treat different species, and is useful to identify pre-miRNAs in large eukaryotic genomes.

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izMiR forum

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izMiR classification

izMiR specifications

Software type:
Framework/Library
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

izMiR distribution

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izMiR support

Maintainer

  • Jan Baumbach <>

Credits

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Publications

Institution(s)

Molecular Biology and Genetics, Izmir Institute of Technology, Urla, Turkey; Computational Systems Biology, Max Planck Institute for Informatics, Saarbrücken, Germany; Computational Biology, University of Southern Denmark, Odense, Denmark; Bionia Incorporated, Urla, Turkey

Funding source(s)

Supported by the Scientific Research Council of Turkey (TUBITAK, Grant No: 113E326).

Link to literature

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