J-Express statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

J-Express specifications

Information


Unique identifier OMICS_00767
Name J-Express
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input format TXT
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline J-Express Team

Publications for J-Express

J-Express citations

 (79)
call_split

Peripheral Blood Stem Cell Mobilization in Healthy Donors by Granulocyte Colony Stimulating Factor Causes Preferential Mobilization of Lymphocyte Subsets

2018
Front Immunol
PMCID: 5941969
PMID: 29770133
DOI: 10.3389/fimmu.2018.00845
call_split See protocol

[…] mples Mann–Whitney U test and the Chi Square test for comparison of unpaired groups. Correlations between continuous variables are given as the Kendall’s tau-b coefficient with corresponding p-value. J-Express (MolMine AS, Bergen, Norway) was applied for bioinformatics analyses (). Time to reconstitution was analyzed with the Kaplan–Meier survival method with the log-rank test, Cox regression with […]

call_split

Inflammatory Mediator Profiles Differ in Sepsis Patients With and Without Bacteremia

2018
Front Immunol
PMCID: 5897503
PMID: 29681903
DOI: 10.3389/fimmu.2018.00691
call_split See protocol

[…] distance and complete linkage gives the best homology between mediator concentrations and the most compact clusters when running the clustering analysis (–).Clustering analyzes were carried out using J-Express (MolMine AS, Bergen, Norway) (). Other statistical analyzes were performed using Graph Pad Prism 5 (Graph Pad Software, Inc., San Diego, CA, USA) and SPSS (Version 20, release 20.0.0.2, IBM […]

library_books

Transcriptome wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure

2018
Sci Rep
PMCID: 5869700
PMID: 29588496
DOI: 10.1038/s41598-018-23667-x

[…] Gene ontology mapping was performed in J-express Gene expression analysis software. Detailed information about the gene included in each category was obtained using Quick GO, which is a fast browser for Gene Ontology terms and annotation ( […]

call_split

Vgll3 and the Hippo pathway are regulated in Sertoli cells upon entry and during puberty in Atlantic salmon testis

2018
Sci Rep
PMCID: 5789820
PMID: 29382956
DOI: 10.1038/s41598-018-20308-1
call_split See protocol

[…] 72713) and mapped with Bowtie2 and normalized by total read counts. Expression of KEGG Hippo pathway genes in testis and selected Hippo genes in other tissues were illustrated with heatmaps made with J-Express v. 2012, using high level mean and variance normalization, and clustered with complete linkage and Euclidean distance measure. […]

call_split

Resistance to the Antiproliferative In Vitro Effect of PI3K Akt mTOR Inhibition in Primary Human Acute Myeloid Leukemia Cells Is Associated with Altered Cell Metabolism

2018
Int J Mol Sci
PMCID: 5855604
PMID: 29382066
DOI: 10.3390/ijms19020382
call_split See protocol

[…] Bioinformatic analyses were performed using the J-Express 2012 software (MolMine AS, Bergen, Norway). For hierarchical clustering analysis, all values from cytometric analyses were calculated using fold change on the Inverse hyperbolic sine (Arcsin […]

call_split

Patients with Treatment Requiring Chronic Graft versus Host Disease after Allogeneic Stem Cell Transplantation Have Altered Metabolic Profiles due to the Disease and Immunosuppressive Therapy: Potential Implication for Biomarkers

2018
Front Immunol
PMCID: 5787552
PMID: 29416533
DOI: 10.3389/fimmu.2017.01979
call_split See protocol

[…] Bioinformatical analyses were performed using the J-Express (MolMine AS, Bergen, Norway) (). For hierarchical clustering, all values were median variance standardized and log(2) transformed. The complete linkage was used as the linkage method, and fo […]

Citations

Looking to check out a full list of citations?

J-Express institution(s)
University of Bergen, Bergen, Norway; Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway; Computational Biology Unit, BCCS, University of Bergen, Bergen, Norway; MolMine AS, Thormoehlens, Bergen, Norway

J-Express reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review J-Express