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JACQ specifications

Information


Unique identifier OMICS_19242
Name JACQ
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainers


  • person_outline Heimo Rainer
  • person_outline Johannes Schachner

JACQ citations

 (16)
library_books

Identification and characterization of a plastidial ω 3 fatty acid desaturase EgFAD8 from oil palm (Elaeis guineensis Jacq.) and its promoter response to light and low temperature

2018
PLoS One
PMCID: 5919639
PMID: 29698515
DOI: 10.1371/journal.pone.0196693

[…] The open reading frame (ORF) cDNA sequence (1362 bp) of a ω-3 fatty acid desaturase (designated as EgFAD8) was cloned from oil palm (Elaeis guineensis Jacq.) mesocarp based on that gene sequence from Elaeis oleifera (GenBank accession: EU057620.1) using RT-PCR. The nucleotide sequence is 100% identity with that from Elaeis oleifera. It encodes a 453 […]

call_split

Differential accumulation of proteins in oil palms affected by fatal yellowing disease

2018
PLoS One
PMCID: 5886584
PMID: 29621343
DOI: 10.1371/journal.pone.0195538
call_split See protocol

[…] ) 3.0.2 (Waters Corp, Milford, MA, USA) using a combination of exact mass and MSE fragment data. Processed spectra were then searched against a custom protein database compiled from Elaeis guineensis Jacq. at the website of the National Center for Biotechnology Information (NCBI:, 04/2016). Management and validation of mass spectrometry data were performed using the Scaffold Q+ (Scaffold version 4 […]

call_split

Plastome Rearrangements in the “Adenocalymma Neojobertia” Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications

2017
Front Plant Sci
PMCID: 5672021
PMID: 29163600
DOI: 10.3389/fpls.2017.01875
call_split See protocol

[…] jo-Marín et al., ), Olea europaea L. (NC_013707.2; Messina, unpublished), Sesamum indicum L. (NC_016433.2; Yi and Kim, ), Salvia miltiorhiza Bunge (NC_020431.1; Qian et al., ), and T. tetragonolobum (Jacq.) L.G. Lohmann using Bowtie2 2.1.0 (Langmead and Salzberg, ) with the default parameters. Mapped reads were assembled into contigs using SPAdes 3.1.0 (Bankevich et al., ) with k-mer sizes of 55 a […]

library_books

Development of EST derived microsatellite markers in the aquatic macrophyte Ranunculus bungei (Ranunculaceae)1

2017
Appl Plant Sci
PMCID: 5546165
PMID: 28791205
DOI: 10.3732/apps.1700022

[…] = 14]), as well as six riparian and aquatic species of Ranunculaceae (R. cheirophyllus Hayata [n = 5], R. natans C. A. Mey. [n = 8], Halerpestes tricuspis (Maxim.) Hand.-Mazz. [n = 12], H. ruthenica (Jacq.) Ovcz. [n = 6], Caltha palustris L. [n = 3], and C. natans Pall. [n = 5]) ().The characteristics of 22 EST-SSR loci are presented in . Fourteen loci were polymorphic, two of which were fixed for […]

library_books

Pseudogenes and Their Genome Wide Prediction in Plants

2016
Int J Mol Sci
PMCID: 5187791
PMID: 27916797
DOI: 10.3390/ijms17121991

[…] In 1977, Jacq et al. discovered in Xenopus laevis a truncated copy of a 5S rRNA gene with a compromised function, which they termed a “pseudogene” []. Pseudogenes have since been found to be ubiquitous in geno […]

library_books

Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication1

2016
Appl Plant Sci
PMCID: 5077280
PMID: 27785381
DOI: 10.3732/apps.1600048

[…] e different runs was 84.3%, producing 13 million clusters. The percentage of bases having a quality score above Q30 was 93.7%.Assembly was performed using the chloroplast of Tanaecium tetragonolobum (Jacq.) L. G. Lohmann (NC_027955) as a guide sequence for MITObim 1.7 (). First, MITObim mapped reads to the reference genome using MIRA version 4 () and an initial set of contigs was built (Appendix S […]

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