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Jalview | Java alignment editor

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A system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

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Jalview forum

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Jalview classification

Jalview specifications

Unique identifier:
OMICS_00885
Interface:
Graphical user interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Wikipedia:
https://en.wikipedia.org/wiki/Jalview
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Maintained:
Yes

Jalview distribution

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Jalview support

Maintainer

  • Geoffrey J. Barton <>

Credits

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Publications

Institution(s)

School of Life Sciences Research, College of Life Sciences, University of Dundee, Dow Street, Dundee, UK

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