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JAMM specifications


Unique identifier OMICS_08439
Alternative name Joint Analysis of NGS replicates via Mixture Model clustering
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.7
Stability Stable
Maintained Yes




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  • person_outline Uwe Ohler
  • person_outline Mahmoud Ibrahim

Publication for Joint Analysis of NGS replicates via Mixture Model clustering

JAMM citation


Recent advances in ChIP seq analysis: from quality management to whole genome annotation

Brief Bioinform
PMCID: 5444249
PMID: 26979602
DOI: 10.1093/bib/bbw023

[…] otein-binding events using an EM algorithm. SISSRs [], Peakzilla [] and Q [] focus on the equivalence between the read numbers of positive and negative strands to improve peak resolution. PePr [] and JAMM [] integrate information from multiple replicates to identify consistent or differential binding sites. The multiple hypothesis correction is performed to calculate false-discovery rates (FDRs) u […]

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JAMM institution(s)
Department of Biology, Humboldt University, Berlin, Germany; The Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine Berlin-Buch, Berlin, Germany
JAMM funding source(s)
Supported by the Max-Delbruck-Center/New-York University Exchange Program.

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