JASPAR specifications

Unique identifier:
OMICS_00538
Database management system:
MySQL
Data access:
File download, Browse
Maintained:
Yes
Restrictions to use:
None
Community driven:
No
User data submission:
Not allowed
Wikipedia:
https://en.wikipedia.org/wiki/JASPAR
  • Animals
  • Fungi
  • Plants

JASPAR support

Maintainer

  • Wyeth Wasserman <>

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Publications

Institution(s)

Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway; Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children’s Hospital Research Institute, University of British Columbia, Vancouver, BC, Canada; University of Grenoble Alpes, CNRS, CEA, INRA, BIG-LPCV, Grenoble, France; INSERM, UMR1090 TAGC, Marseille, France; Aix-Marseille Universite, UMR1090 TAGC, Marseille, France; Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium; VIB Center for Plant Systems Biology, Ghent, Belgium; Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London, UK; Computational Regulatory Genomics, MRC London Institute of Medical Sciences, London, UK; The Bioinformatics Centre, Department of Biology and Biotech Research & Innovation Centre, University of Copenhagen, Copenhagen, Denmark; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital Radiumhospitalet, Oslo, Norway

Funding source(s)

Supported by Norwegian Research Council, Helse Sør-Øst, and University of Oslo through the Centre for Molecular Medicine Norway (NCMM); Genome Canada and Canadian Institutes of Health Research (OnTarget Grants) [255ONT and BOP-149430]; Natural Sciences and Engineering Research Council of Canada (Discovery Grant) [RGPIN- 2017–06824]; Weston Brain Institute [20R74681]; Agence Nationale de la Recherche [ANR-10- LABX-49–01]; IDEX graduate schoool; CNRS; Research Foundation– Flanders Grant [G001015N]; French Ministry of Higher Education and Research (MESR) PhD Fellowship; Lundbeck Foundation; Independent Research Fund Denmark; Innovation Fund Denmark; Elixir Denmark; Wellcome Trust [106954]; Biotechnology and Biological Sciences Research Council [BB/N023358/1]; Medical Research Council UK [MC UP 1102/1].

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2 user reviews

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khana10

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A carefully and manually curated database of transcription factor (TF) binding profiles stored as position frequency matrices (PFM) and transcription factor flexible models (TFFM) for TFs from species in six taxonomic groups.

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Alvaro Sebastian

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Regularly updated (every 1-2 years) database of transcription factor binding profiles (in the form of PWMs) from published experimental data. It includes a well-curated collection of non-redundant profiles (JASPAR CORE) that can be used for regulatory element genome-wide predictions.

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