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JBrowse | A next-generation genome browser

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A web-based genome browser, allowing many sources of data to be visualized, interpreted and navigated in a coherent visual framework. JBrowse uses efficient data structures, pre-generation of image tiles and client-side rendering to provide a fast, interactive browsing experience. Many of JBrowse's design features make it well suited for visualizing high-volume data, such as aligned next-generation sequencing reads.

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JBrowse forum

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JBrowse classification

JBrowse specifications

Unique identifier:
OMICS_00918
Restrictions to use:
None
Stability:
Stable
Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes

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No open topic.

JBrowse classification

JBrowse specifications

Unique identifier:
OMICS_00918
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
License:
Artistic License version 2.0, GNU Lesser General Public License version 3.0
Version:
1.12.1
Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
Javascript
Computer skills:
Advanced
Stability:
Stable

JBrowse distribution

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JBrowse support

Documentation

Maintainer

  • Ian H Holmes <>
This tool is not maintained anymore.

Credits

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Publications

Institution(s)

Department of Bioengineering, University of California at Berkeley, Berkeley, CA, USA

Funding source(s)

This work was funded by NIH grant HG004483.

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