JCell specifications

Information


Unique identifier OMICS_17482
Name JCell
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Christian Spieth <>

Publication for JCell

JCell in publications

 (4)
PMCID: 4896058
PMID: 27241911
DOI: 10.1083/jcb.201602083

[…] phase without cell propulsion to remove any bias from artificial cell shape initialization and build up a steady-state chemoattractant concentration field. adhesion values are set to neutral (jcell–cell = 1, jcell–medium = 0.5), and the relative importance of the terms are set to λv = 1, λc = 0.2, λp = 0.65, λm = 1.25, and λr = 0.05, unless otherwise stated. repolarization delay is set […]

PMCID: 4654849
PMID: 26589144
DOI: 10.1186/s12918-015-0222-7

[…] \setlength{\oddsidemargin}{-69pt} \begin{document}$(\vec {x},\vec {x}\prime)$\end{document}(x→,x→′) represents the set of adjacent lattice site pairs. there are three non-zero types of adhesion: jcell,cell, jcell,border and jcell,ecm. jcell,cell represents the adhesion strength between cells, and jcell,ecm the adhesion strength of cells to the ecm. the lattice is surrounded with a border by w […]

PMCID: 3711033
PMID: 23862013
DOI: 10.1242/bio.20134523

[…] was slightly compressed, i.e. v0 = 95. the initial variation of v0 did not affect the results qualitatively., as previously shown (; ), the energy to maintain cell–cell adhesion is defined as γ = jcell–medium−jcell–cell/2, where jcell–cell and jcell–medium are the interfacial energy between cells and that between the cell and medium, respectively. in our study, the laser-used estimation […]

PMCID: 1177928
PMID: 15960850
DOI: 10.1186/1472-6750-5-18

[…] for membrane display., murine t cells specific for pcc were derived from spleens harvested from the t cell receptor transgenic mouse strains b10.cg-tg(tcrand)53hed/j and b6;sjl-tg(tcrand)53hed/jcell (the jackson laboratory). t cells were isolated from splenocytes by magnetic bead selection (dynal) according to the manufacturer's instructions. t cell adhesion assays to supported membranes […]


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JCell institution(s)
Centre for Bioinformatics Tubingen (ZBIT), University of Tubingen, Tubingen, Germany
JCell funding source(s)
This work was partially supported by the National Genome Research Network (NGFN) from the Federal Ministry of Education and Research in Germany under contract number 0313323 and by the State of Baden-Wurttemberg with the doIT Software Research Award 2005.

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