JCVI Primer Designer specifications


Unique identifier OMICS_02330
Name JCVI Primer Designer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Kelvin Li

Publication for JCVI Primer Designer

JCVI Primer Designer citations


Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes

Adv Bioinformatics
PMCID: 4137498
PMID: 25157264
DOI: 10.1155/2014/101894

[…] served, degenerate, multiplex-compatible primers designed to tile overlapping regions across multiple related whole genomes or regions.JCVI has an automated degenerate PCR primer design system called JCVI Primer Designer, which is similar to run_tiled_primers in that it designs degenerate primers to tile across viral genomes []. The major difference is that it begins with a consensus sequence cont […]


Automated degenerate PCR primer design for high throughput sequencing improves efficiency of viral sequencing

Virol J
PMCID: 3548747
PMID: 23131097
DOI: 10.1186/1743-422X-9-261

[…] Project name: JCVI Primer Designer.Project home page:http://sourceforge.net/projects/primerdesigner/.Operating system: Tested and in production on Linux.Programming language: Perl.License: GNU GPL.Any restrictions […]

JCVI Primer Designer institution(s)
The J, Craig Venter Institute, Chinakville, MD, USA

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