JDotter pipeline

JDotter specifications


Unique identifier OMICS_15405
Name JDotter
Alternative name Java-Dotter
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Output data Dot plots
Output format JPEG or JDotter
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements JRE
Maintained Yes


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Publication for Java-Dotter

JDotter IN pipeline

PMCID: 3218844
PMID: 21689454
DOI: 10.1186/gb-2011-12-6-r56

[…] lncrna-tare sequences based on the predicted lncrna-tare-4l sequence. we then retrieved fasta sequence of the most telomere-proximal 50,000 bp on each chromosome end from plasmodb v6.5, and used jdotter [83] software to create dna dotplots mapping the telomeric repeats, tares 1 through 5, rep20, and the first predicted gene on each end. we placed each predicted lncrna-tare gene onto […]

JDotter institution(s)
Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada
JDotter funding source(s)
This work was supported by funds from NSERC OPG0155125-01 and NIH U01-AI48653-02.

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