JEPETTO specifications

Information


Unique identifier OMICS_02247
Name JEPETTO
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements
Cytoscape
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


No version available

Documentation


Publication for JEPETTO

JEPETTO citations

 (2)
library_books

Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐ and EGF‐driven gliomas

2016
Mol Syst Biol
PMCID: 5147052
PMID: 27888226
DOI: 10.15252/msb.20166969

[…] a replicate. Genes that were expressed in more than 80% of cells at < 1 CPM were filtered prior to each analysis. Transcription factor motif enrichment analysis was done via OPOSSOM (Sui Ho et al, ). JEPETTO (Winterhalter et al, ), run via Cytoscape (Shannon et al, ), was used to compute pathways having significant overlap with genes up‐regulated upon chromosome 13 loss, and their protein interact […]

library_books

EP300 Protects from Light Induced Retinopathy in Zebrafish

2016
Front Pharmacol
PMCID: 4871856
PMID: 27242532
DOI: 10.3389/fphar.2016.00126

[…] We next investigated which functional networks were significantly associated with the 37 common DEGs using the JEPETTO analytical plugin for Cytoscape (Winterhalter et al., ). JEPETTO performs integrated analyses using protein interaction networks such as STRING (Jensen et al., ) and various databases such as […]

JEPETTO institution(s)
Institute of Systems and Synthetic Biology, University of Evry Val-d'Essonne,Evry, France; School of Computing Science, Newcastle University, Newcastle, UK

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