JEPETTO statistics

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Associated diseases

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JEPETTO specifications

Information


Unique identifier OMICS_02247
Name JEPETTO
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements
Cytoscape
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Documentation


Publication for JEPETTO

JEPETTO in publications

 (13)
PMCID: 5646998
PMID: 28791364
DOI: 10.3892/mmr.2017.7149

[…] active ingredients, of which 30 compounds were associated with 217 protein targets. a total of 31 significant pathways were obtained by performing enrichment analyses of 217 proteins using the jepetto 3.x plugin, and 16 classes of gene-associated diseases were revealed by performing enrichment analyses using database for annotation, visualization and integrated discovery v6.7. the present […]

PMCID: 5314717
PMID: 28209158
DOI: 10.1186/s12918-017-0393-5

[…] database, the kegg and the go biological process databases were used as reference molecular interaction network and database, respectively. both analysis were performed using the cytoscape plugin jepetto []., the regulatory core underlying spontaneous immortalization (fig. ) was obtained from the large network (fig. ) by iteratively reducing all the simple mediator (i.e. […]

PMCID: 5147052
PMID: 27888226
DOI: 10.15252/msb.20166969

[…] genes that were expressed in more than 80% of cells at < 1 cpm were filtered prior to each analysis. transcription factor motif enrichment analysis was done via opossom (sui ho et al, ). jepetto (winterhalter et al, ), run via cytoscape (shannon et al, ), was used to compute pathways having significant overlap with genes up‐regulated upon chromosome 13 loss, and their protein […]

PMCID: 5090199
PMID: 27804980
DOI: 10.1038/srep35781

[…] and retrieved 16 genes likely associated with both igan and sle. and to interpret the biological relevance of these genes, we obtained the interaction network of the input gene by cytoscape with jepetto and reactome plugin., for all snps, we examined the clustering patterns of genotypes and selected mass peaks and confirmed that the genotype calls were of good quality (rs10807150 […]

PMCID: 5097955
PMID: 27843766
DOI: 10.1016/j.gdata.2016.10.006

[…] and fdr ≤ 0.05) in at least one comparison. pearson correlations were run on the union of log2fc using the wgcna and heatmap.2 bioconductor packages in r , , ., ingenuity pathway analysis (ipa) and jepetto (version 1.3.1) were used to determine the biological functions of modules in the co-expression analysis. these tools accept a list of genes and produce a list of known biological functions […]


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JEPETTO institution(s)
Institute of Systems and Synthetic Biology, University of Evry Val-d'Essonne,Evry, France; School of Computing Science, Newcastle University, Newcastle, UK

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