Jitterbug specifications


Unique identifier OMICS_10229
Name Jitterbug
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The mandatory input files required by Jitterbug are a BAM file of reads mapped to the reference genome and the annotation of transposable elements in that reference in GFF format.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Stephan Ossowski <>

Publication for Jitterbug

Jitterbug institution(s)
Genomic and Epigenomic Variation in Disease Group, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Center for Research in Agricultural Genomics, CRAG (CSIC-IRTA-UAB-UB), Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain

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