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jMRUI specifications


Unique identifier OMICS_15260
Name jMRUI
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Medium
Version 5.2
Stability Stable
Maintained Yes


No version available


  • person_outline Michał Jabłoński

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Publication for jMRUI

jMRUI citations


Metformin in gestational diabetes: the offspring follow up (MiG TOFU): body composition and metabolic outcomes at 7–9 years of age

PMCID: 5905785
PMID: 29682291
DOI: 10.1136/bmjdrc-2017-000456

[…] d the percentage of VAT) were calculated.For MRS analysis, water and fat peaks in each spectrum were integrated, and the area under the curve (AUC) of water peak and lipid peaks was calculated (using jMRUI 5.2). The AUC gave an estimate of the relative amount of water and fat present in the spectroscopy voxel. The fat fraction was calculated as the AUC of lipid divided by the sum of the AUCs of li […]


Differences in Muscle Metabolism Between Triathletes and Normally Active Volunteers Investigated Using Multinuclear Magnetic Resonance Spectroscopy at 7T

Front Physiol
PMCID: 5891578
PMID: 29666584
DOI: 10.3389/fphys.2018.00300

[…] All measured spectra were analyzed using the jMRUI (Java-Based Magnetic Resonance User Interface; version 5) with the AMARES (Advanced Method for Accurate, Robust, and Efficient Spectral Fitting) time-domain fitting algorithm (Vanhamme et al., ) […]


Imaging markers of response to combined BRAF and MEK inhibition in BRAF mutated vemurafenib sensitive and resistant melanomas

PMCID: 5908289
PMID: 29682188
DOI: 10.18632/oncotarget.24709

[…] ed prior and post water suppression (cubic voxel with 3 to 4 mm side, TE/TR = 16 ms/2500 ms, 256 averages, 2048 points). Preprocessing and quantitation of in vivo 1H-MRS data were performed using the jMRUI software package: unsuppressed water peaks were quantified via the AMARES (Advanced Method for Accurate, Robust and Efficient Spectral) fitting, whereas choline peaks were quantified via QUEST ( […]


Persistent Long Term Structural, Functional, and Metabolic Changes After Stress Induced (Takotsubo) Cardiomyopathy

PMCID: 5841855
PMID: 29128863
DOI: 10.1161/CIRCULATIONAHA.117.031841

[…] st Modified Look-Locker Imaging T1 mapping. Data for T1 mapping were acquired with 3(3)3(3)5 and 5(3)3 schemes for native and postcontrast T1 measurement, respectively. 31P-CMRS data were analyzed in JMRUi3.0 as described previously. The phosphocreatine/γ-adenosine triphosphate (PCr/γATP) ratio (which is the gold standard for in vivo assessment of myocardial energetic status) was determined after […]


Efficacy of high intensity, low volume interval training compared to continuous aerobic training on insulin resistance, skeletal muscle structure and function in adults with metabolic syndrome: study protocol for a randomized controlled clinical trial (Intraining MET)

PMCID: 5828481
PMID: 29482601
DOI: 10.1186/s13063-018-2541-7
call_split See protocol

[…] scopy (PRESS) sequence with and without water saturation to evaluate the carnosine and water signals, respectively. For the processing of the signals and the absolute quantification of carnosine, the jMRUI 5.1 program (Autonomous University of Barcelona, Spain) will be used, with phase correction, Gaussian apodization, adjustment of the water reference to 4.7 ppm and subtraction of water, lipids a […]


The Effects of β Alanine Supplementation on Muscle pH and the Power Duration Relationship during High Intensity Exercise

Front Physiol
PMCID: 5826376
PMID: 29515455
DOI: 10.3389/fphys.2018.00111

[…] as for the baseline visit. The integral of the carnosine-H2 peak [at ~8 parts per million (ppm)] was quantified relative to the water peak integral (×1,000) using the AMARES fitting algorithm in the jMRUI (version 3) software package ( Muscle [carnosine] was expressed as a ratio relative to the water peak. To determine the reliability of this assessment, a separate c […]


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jMRUI institution(s)
Institute of Scientific Instruments of the CAS, Brno, Czech Republic; Faculty of Science, Masaryk University, Brno, Czech Republic
jMRUI funding source(s)
This work was funded by the European Union’s Seventh Framework Programme (FP7/2007-2013) under grant agreement n°ITN-GA-2012-316679–TRANSACT and by MEYS CR (LO1212), its infrastructure by MEYS CR and EC (CZ.1.05/2.1.00/01.0017) and by ASCR (RVO:68081731).

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