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jMRUI specifications

Information


Unique identifier OMICS_15260
Name jMRUI
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Medium
Version 5.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Michał Jabłoński <>

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Publication for jMRUI

jMRUI in publications

 (196)
PMCID: 5891578
PMID: 29666584
DOI: 10.3389/fphys.2018.00300

[…] vpcr), maximal rate of oxidative phosphorylation, i.e., mitochondrial capacity (qmax), and time course of intracellular ph changes in skeletal muscle., all measured spectra were analyzed using the jmrui (java-based magnetic resonance user interface; version 5) with the amares (advanced method for accurate, robust, and efficient spectral fitting) time-domain fitting algorithm (vanhamme et al., […]

PMCID: 5908289
PMID: 29682188
DOI: 10.18632/oncotarget.24709

[…] prior and post water suppression (cubic voxel with 3 to 4 mm side, te/tr = 16 ms/2500 ms, 256 averages, 2048 points). preprocessing and quantitation of in vivo 1h-mrs data were performed using the jmrui software package: unsuppressed water peaks were quantified via the amares (advanced method for accurate, robust and efficient spectral) fitting, whereas choline peaks were quantified via quest […]

PMCID: 5841855
PMID: 29128863
DOI: 10.1161/CIRCULATIONAHA.117.031841

[…] modified look-locker imaging t1 mapping. data for t1 mapping were acquired with 3(3)3(3)5 and 5(3)3 schemes for native and postcontrast t1 measurement, respectively. 31p-cmrs data were analyzed in jmrui3.0 as described previously. the phosphocreatine/γ-adenosine triphosphate (pcr/γatp) ratio (which is the gold standard for in vivo assessment of myocardial energetic status) was determined […]

PMCID: 5826376
PMID: 29515455
DOI: 10.3389/fphys.2018.00111

[…] as for the baseline visit. the integral of the carnosine-h2 peak [at ~8 parts per million (ppm)] was quantified relative to the water peak integral (×1,000) using the amares fitting algorithm in the jmrui (version 3) software package (http://www.mrui.uab.cat/mrui). muscle [carnosine] was expressed as a ratio relative to the water peak. to determine the reliability of this assessment, a separate […]

PMCID: 5816050
PMID: 29484298
DOI: 10.3389/fnut.2018.00006

[…] purposes (figures b,c)., for both baseline and exercise protocols, mrs data were quantified by peak fitting, with the assumption of prior knowledge, using the amares fitting algorithm in the jmrui (version 3) software package. spectra were fitted assuming the presence of the following peaks: pi, phosphodiester, pcr, α-atp (two peaks, amplitude ratio 1:1), γ-atp (two peaks, amplitude […]


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jMRUI institution(s)
Institute of Scientific Instruments of the CAS, Brno, Czech Republic; Faculty of Science, Masaryk University, Brno, Czech Republic
jMRUI funding source(s)
This work was funded by the European Union’s Seventh Framework Programme (FP7/2007-2013) under grant agreement n°ITN-GA-2012-316679–TRANSACT and by MEYS CR (LO1212), its infrastructure by MEYS CR and EC (CZ.1.05/2.1.00/01.0017) and by ASCR (RVO:68081731).

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