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jPOST specifications

Information


Unique identifier OMICS_32329
Name jPOST
Alternative name Japan ProteOme STandard repository/database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Maintainer


  • person_outline Yasushi Ishihama

Publication for Japan ProteOme STandard repository/database

jPOST citations

 (6)
library_books

Proteome Profiling of Diabetic Mellitus Patient Urine for Discovery of Biomarkers by Comprehensive MS Based Proteomics

2018
Proteomes
PMCID: 5874768
PMID: 29415455
DOI: 10.3390/proteomes6010009

[…] MS scan parameter settings were as follows: collision energy, 35%; electrospray voltage, 2.0 kV; capillary temperature, 250 °C and isolation windows 4 m/z. All MS files (.raw) are accessible from the JPOST repository at URL: http://jpostdb.org/.All MS and MS/MS data were analyzed by Proteome Discoverer TM (v2.1, Thermo) for protein and peptide identification with SEQUEST HT algorithms. The data we […]

library_books

Global Analysis of Membrane associated Protein Oligomerization Using Protein Correlation Profiling*

2017
PMCID: 5672003
PMID: 28887381
DOI: 10.1074/mcp.RA117.000276

[…] The Gaussian fitting code was deposited (https://github.com/dlchenstat/Gaussian-fitting), the raw data and MaxQuant search outputs were deposited at JPOST (PXD006694), and spectra for single peptide hits were deposited at MS-Viewer () (http://msviewer.ucsf.edu/prospector/cgi-bin/msform.cgi?form=msviewer) (Search keys: uerfksr5dl, sceybigrnm, osakj […]

library_books

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

2017
J Proteome Res
PMCID: 5715286
PMID: 28849660
DOI: 10.1021/acs.jproteome.7b00370

[…] ar to mzQuantML but stores data in a tab-separated text format, making it straightforward to load into a spreadsheet or statistical software. mzTab is now supported as part of the PRIDE, MassIVE, and jPOST submission pipelines, and several popular analysis tools in the field are working toward supporting it (e.g., MaxQuant). In the initial version 1.0 design, an extension for MS metabolomics data […]

library_books

A Golden Age for Working with Public Proteomics Data

2017
Trends Biochem Sci
PMCID: 5414595
PMID: 28118949
DOI: 10.1016/j.tibs.2017.01.001

[…] o disappeared . However, at present the field is experiencing a ‘golden age’ for MS proteomics resources. Several notable resources have come into being, including MassIVE (http://massive.ucsd.edu/), jPOST (http://jpost.org/), the Human Proteome Map (http://www.humanproteomemap.org/), ProteomicsDB (https://www.proteomicsdb.org/), and Chorus (https://chorusproject.org/) (for a recent review, see ). […]

library_books

The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes

2016
Nucleic Acids Res
PMCID: 5210597
PMID: 28053160
DOI: 10.1093/nar/gkw1188

[…] s make it difficult for the potential users to find the database URL on the web. Among the databases published this year, the name of the Japanese Proteomics Standard repository has been changed from jPOST (a name shared with the web site of the Jerusalem Post newspaper) to JPOSTrepo, which does not have such a connotation. However, the previously published HIPPIE (Human Integrated Protein–Protein […]

library_books

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

2016
Nucleic Acids Res
PMCID: 5210636
PMID: 27924013
DOI: 10.1093/nar/gkw936

[…] f the PX data workflow, two new resources have joined PX: the MassIVE repository (University of California San Diego, CA, USA, http://massive.ucsd.edu) joined in June 2014, and the recently developed jPOST resource (several institutions, Japan, http://jpost.org/) has just joined PX in July 2016, thus demonstrating PX's unifying role in the proteomics community by inclusion of members that were not […]

Citations

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jPOST institution(s)
Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, Kashiwa, Japan; Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan; Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan; Graduate School of Medical Sciences, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; Kumamoto University Hospital, Kumamoto, Japan; Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan; Center for iPS Cell Research and Application, Kyoto University, Kyoto, Japan; Trans-IT, Kaminokawa, Japan
jPOST funding source(s)
Supported by the Database Integration Coordination Program from National Bioscience Database Center, Japan Science and Technology Agency [15650519, 18063028].

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