jSquid statistics

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Citations per year

Number of citations per year for the bioinformatics software tool jSquid
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Tool usage distribution map

This map represents all the scientific publications referring to jSquid per scientific context
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Associated diseases

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Popular tool citations

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jSquid specifications

Information


Unique identifier OMICS_26691
Name jSquid
Interface Web user interface
Restrictions to use None
Input format jSquidXML,XGMML
Output format XGMML,GIF,EPS
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Erik Sonnhammer

Additional information


http://jsquid.sbc.su.se/tutorial.html

Information


Unique identifier OMICS_26691
Name jSquid
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Source code URL http://jsquid.sbc.su.se/download/source/
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Erik Sonnhammer

Additional information


http://jsquid.sbc.su.se/tutorial.html

Publication for jSquid

jSquid citations

 (2)
library_books

Comparative interactomics with Funcoup 2.0

2011
Nucleic Acids Res
PMCID: 3245127
PMID: 22110034
DOI: 10.1093/nar/gkr1062

[…] ltiple query identifiers and view the local subnetwork. illustrates the results page using the gene DYX1C1 (Dyslexia susceptibility 1 candidate gene 1 protein). At the top, an integrated Java applet jSquid () is shown if Java is installed, otherwise a static picture will appear. The size and properties of the subnetwork can be controlled on the query page. For instance, the confidence cut-off can […]

library_books

Gerontome: a web based database server for aging related genes and analysis pipelines

2010
BMC Genomics
PMCID: 3005931
PMID: 21143804
DOI: 10.1186/1471-2164-11-S4-S20

[…] ent analysis. Users can browse the GO enrichment analysis results.Gerontome provides several viewers for the TFBSs position, protein structure, and protein interaction of each entry by using Gbrowse, jSquid [], and JMol programs. In the Gbrowse interface, users can compare biological features between homologous genes and proteins which represent relatively closed protein groups. jSquid displays th […]


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jSquid institution(s)
Stockholm Bioinformatics Centre, Stockholm University, Stockholm, Sweden; Department of Bioinformatics, Upper Austrian University of Applied Sciences, Hagenberg, Austria

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