Juicer specifications

Information


Unique identifier OMICS_13559
Name Juicer
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Perl, Shell (Bash)
Parallelization CUDA, Other
License MIT License
Computer skills Advanced
Stability Stable
Requirements GNU CoreUtils, BWA, CUDA, Java SDK, Apache Ant, OpenLava, LSF, SLURM, GridEngine
Maintained Yes

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Documentation


Maintainer


  • person_outline Aiden E.L. <>

Publications for Juicer

Juicer institution(s)
The Center for Genome Architecture, Baylor College of Medicine, Houston, TX, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; Department of Computer Science and Department of Computational and Applied Mathematics, Rice University, Houston, TX, USA; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA; Department of Biology, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; Department of Systems Biology, Harvard Medical School, Boston, MA, USA
Juicer funding source(s)
This work was supported by an NSF Graduate Research Fellowship (DGE0946799 and DGE1144152), an NIH New Innovator Award (OD008540-01), an NSF Physics Frontier Center (PHY-1427654, Center for Theoretical Biological Physics), an NHGRI CEGS (HG006193), NVIDIA, IBM, Google, a CPRIT Scholar Award (R1304), a McNair Medical Institute Scholar Award, and the President’s Early Career Award in Science and Engineering, and an NHGRI grant (HG003067).

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