jpHMM specifications

Information


Unique identifier OMICS_06323
Name jumping profile Hidden Markov Model
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Viruses
    • Hepatitis B virus
    • Human immunodeficiency virus

Versioning


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Maintainer


  • person_outline jpHMM Team <>

Information


Unique identifier OMICS_06323
Name jumping profile Hidden Markov Model
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Viruses
    • Hepatitis B virus
    • Human immunodeficiency virus

Maintainer


  • person_outline jpHMM Team <>

jpHMM article

jpHMM citations

 (2)
2017
PMCID: 5536263

[…] main circulating recombinant forms (crfs) were used to identify and designate hiv-1 subtypes (s1 table). recombinant subtype analysis was performed using a combination of hiv-1 genotyping tool[10], jumping profile hidden markov model [11], visual inspection, and construction of subregion ml trees with bootstrap analyses to confirm breakpoint assignments. bootstrap values of 95 percent or higher […]

2016
PMCID: 4719688

[…] phylogenetic trees were constructed using mega 5.0 with the neighbor-joining method and 1000 bootstrap replicates, based on the kimura 2-parameter model (mega version 5.0). according to the online jphmm program (http://jphmm.gobics.de/submission_hiv.html) and online rip 3.0 (http://www.hiv.lanl.gov/content/sequence/rip/rip.html), the possible intertype mosaicisms of unassigned reading frames […]

jpHMM institution(s)
Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Germany

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