JuncBASE specifications

Information


Unique identifier OMICS_01335
Name JuncBASE
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.6
Stability Stable
Maintained Yes

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JuncBASE article

JuncBASE citation

2016
PMCID: 4980276

[…] estimates are used unless isoforms are specifically mentioned., to discover novel splice events and analyze differential splicing, the subsampled reads were run through the juncbase v0.610 pipeline. juncbase uses junction reads from an rna-seq experiment to calculate inclusion and exclusion of individual splicing events. these are measured as percent spliced in (psi). such measures are generally […]

JuncBASE institution(s)
Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA

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