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JUNG specifications

Information


Unique identifier OMICS_16851
Name JUNG
Alternative name Java Universal Network/Graph
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.0.1
Stability Stable
Requirements
JDK, Collections-Generic, Cern Colt Scientific Library
Maintained Yes

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  • person_outline Joshua O'Madadhain <>

JUNG in publications

 (5)
PMCID: 4980799
PMID: 27510908
DOI: 10.1186/s12942-016-0059-3

[…] gs-epiviz is developed with java for a cross-platform purpose and the system architecture is illustrated in fig. . geo-social mixing patterns are identified from human interaction network data. java universal network/graph framework (jung) is used to calculate node centrality (i.e., degree, betweenness) based on human interaction data. seir agent-based modelling is implemented to simulate […]

PMCID: 3524320
PMID: 23281592
DOI: 10.1186/1752-0509-6-S3-S8

[…] we select two methods, one each from parameter-based and parameter-free methods: pagerank with priors (prp) [] and interconnectedness (icn) []. parts of implementation of prp are done using jung (java universal network/graph; jung.sourceforge.net) framework [] as described earlier []. to evaluate the performance of vs-based approach and compare it with two other methods, we used […]

PMCID: 3214194
PMID: 22032859
DOI: 10.1186/1756-0500-4-452

[…] gene ids [], ensembl ids [], unigene ids [] and gene symbols), protein identifiers (swissprot accession codes []) and disease identifiers (omim ids [])., gviz is written in java and uses jung 2 (java universal network/graph framework, http://jung.sourceforge.net/), a java library that provides a common and extensible language for the modeling, analysis and visualization of data […]

PMCID: 2981879
PMID: 21067549
DOI: 10.1186/1745-7580-6-S2-S7

[…] come in handy for reading various file formats. the jfreechart library (http://www.jfree.org/jfreechart/) provides straight forward ways to realize chart based visualizations. the java universal network/graph framework (http://jung.sourceforge.net/) can be used to manage the data structures in a graph like data structure. instead of implementing pview from scratch […]

PMCID: 2657789
PMID: 19245720
DOI: 10.1186/1471-2105-10-73

[…] was 2.5.2 and networkanalyzer was 2.5.1., the implementation of the prioritization methods, pagerank with priors, hits with priors, and the k-step markov approach are all available in the jung (java universal network/graph) [] framework. it is a java package that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented […]


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