jvenn statistics

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Citations per year

Number of citations per year for the bioinformatics software tool jvenn
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Tool usage distribution map

This map represents all the scientific publications referring to jvenn per scientific context
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Associated diseases

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Protocols

jvenn specifications

Information


Unique identifier OMICS_05562
Name jvenn
Interface Web user interface
Restrictions to use None
Input data Lists
Output data Venn diagram, lists
Output format PNG, SVG, CSV
Programming languages Javascript
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Basic
Version 1.8
Stability Stable
Requirements
jQuery, jvenn.min.js
Maintained Yes

Maintainer


  • person_outline Jérôme Mariette

Publication for jvenn

jvenn citations

 (27)
library_books

Comparative genomics of the wheat fungal pathogen Pyrenophora tritici repentis reveals chromosomal variations and genome plasticity

2018
BMC Genomics
PMCID: 5913888
PMID: 29685100
DOI: 10.1186/s12864-018-4680-3

[…] ologous protein clustering of predicted protein sequences was conducted with OrthoFinder version 1.1.4 [] at an expected value 0.001. A Venn diagram of protein orthologous groups was constructed with JVenn [].Gene functional annotation (e.g. GO and InterPro terms) and enrichment was found for orthologous groups using StringDB [] and DAVID Bioinformatics resource [, , ].Genome data for BFP (https:/ […]

library_books

Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites

2018
PMCID: 5853956
PMID: 29503181
DOI: 10.1016/j.chom.2018.01.008

[…] (369 genes) and P. yoelii (907 genes) were individually transformed into orthologs of the five other Plasmodium species. Ortholog sets (syntenic/non-syntenic) among the species were identified using jvenn () and assigned according to the species identifier pf, pv, pk, pb, pc or py ( and ).To investigate the association between heterochromatic region and distribution of kir and SICAvar genes as we […]

call_split

Molecular Networks of Postia placenta Involved in Degradation of Lignocellulosic Biomass Revealed from Metadata Analysis of Open Access Gene Expression Data

2018
PMCID: 5859471
PMID: 29559843
DOI: 10.7150/ijbs.22868
call_split See protocol

[…] Karyotic Orthologous Groups (KOG) and CAZy , for analyzing the results obtained. The differentially expressed gene lists of the respective experimental conditions were compared using Venny 2.1 and Jvenn softwares. We have retrieved sample level FPKM (Fragments Per Kilobase of transcripts per Million) values, P-values and log fold change values from supplementary files provided for GSE84529 dat […]

library_books

Bacterial community assembly from cow teat skin to ripened cheeses is influenced by grazing systems

2018
Sci Rep
PMCID: 5760519
PMID: 29317671
DOI: 10.1038/s41598-017-18447-y

[…] the R package mixOmics. The OTU networks were generated by QIIME pipeline and networks were visualized using Cytoscape 3.4.0 by applying the spring embedded layout. Venn diagrams were generated using Jvenn (available at http://bioinfo.genotoul.fr/jvenn) . […]

library_books

The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna

2018
BMC Genomics
PMCID: 5753479
PMID: 29298680
DOI: 10.1186/s12864-017-4382-2

[…] es detected only in one species. Specifically, 14 orthogroups were unique for P. formosa, 33 for P. latipinna, 24 for P. mexicana, and 19 for P. reticulata (Fig. , created with the online application jvenn []). The unique orthogroups for each of the four species and the 988 orthogroups, which were exclusively identified among the three sexual species, were annotated to detect differences in the oc […]

library_books

Integrative Analysis to Identify Common Genetic Markers of Metabolic Syndrome, Dementia, and Diabetes

2017
PMCID: 5737114
PMID: 29229897
DOI: 10.12659/MSM.905521

[…] on the basis of the evidence supporting the data. The inbuilt statistical algorithm was used to score the association of genes with the disease (DisGeNet score). Venn diagram was plotted using online Jvenn [] tool to visualize common gene signature. […]


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jvenn institution(s)
Plate-forme bio-informatique Genotoul/MIA-T, INRA, Borde Rouge, Castanet-Tolosan, France; Plate-forme SIGENAE/GenPhySE, INRA, Borde Rouge, Castanet-Tolosan, France

jvenn review

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Anonymous user #440's avatar image No country

Anonymous user #440

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Web
Great tool.
Very useful to generate venn up to 6 classes and really easy to integrable within our web site !