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|Interface||Web user interface|
|Restrictions to use||None|
|Output data||Venn diagram, lists|
|Output format||PNG, SVG, CSV|
|License||GNU General Public License version 3.0, GNU General Public License version 2.0|
- person_outline Jérôme Mariette
Publication for jvenn
Comparative genomics of the wheat fungal pathogen Pyrenophora tritici repentis reveals chromosomal variations and genome plasticity
[…] ologous protein clustering of predicted protein sequences was conducted with OrthoFinder version 1.1.4  at an expected value 0.001. A Venn diagram of protein orthologous groups was constructed with JVenn .Gene functional annotation (e.g. GO and InterPro terms) and enrichment was found for orthologous groups using StringDB  and DAVID Bioinformatics resource [, , ].Genome data for BFP (https:/ […]
Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites
[…] (369 genes) and P. yoelii (907 genes) were individually transformed into orthologs of the five other Plasmodium species. Ortholog sets (syntenic/non-syntenic) among the species were identified using jvenn () and assigned according to the species identifier pf, pv, pk, pb, pc or py ( and ).To investigate the association between heterochromatic region and distribution of kir and SICAvar genes as we […]
Molecular Networks of Postia placenta Involved in Degradation of Lignocellulosic Biomass Revealed from Metadata Analysis of Open Access Gene Expression Data
[…] Karyotic Orthologous Groups (KOG) and CAZy , for analyzing the results obtained. The differentially expressed gene lists of the respective experimental conditions were compared using Venny 2.1 and Jvenn softwares. We have retrieved sample level FPKM (Fragments Per Kilobase of transcripts per Million) values, P-values and log fold change values from supplementary files provided for GSE84529 dat […]
Bacterial community assembly from cow teat skin to ripened cheeses is influenced by grazing systems
[…] the R package mixOmics. The OTU networks were generated by QIIME pipeline and networks were visualized using Cytoscape 3.4.0 by applying the spring embedded layout. Venn diagrams were generated using Jvenn (available at http://bioinfo.genotoul.fr/jvenn) . […]
The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna
[…] es detected only in one species. Specifically, 14 orthogroups were unique for P. formosa, 33 for P. latipinna, 24 for P. mexicana, and 19 for P. reticulata (Fig. , created with the online application jvenn ). The unique orthogroups for each of the four species and the 988 orthogroups, which were exclusively identified among the three sexual species, were annotated to detect differences in the oc […]
Integrative Analysis to Identify Common Genetic Markers of Metabolic Syndrome, Dementia, and Diabetes
[…] on the basis of the evidence supporting the data. The inbuilt statistical algorithm was used to score the association of genes with the disease (DisGeNet score). Venn diagram was plotted using online Jvenn  tool to visualize common gene signature. […]
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Very useful to generate venn up to 6 classes and really easy to integrable within our web site !