JWS Online statistics

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JWS Online specifications

Information


Unique identifier OMICS_08770
Name JWS Online
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline JWS Online Team <>

Publications for JWS Online

JWS Online in publications

 (31)
PMCID: 5883050
PMID: 29615663
DOI: 10.1038/s41598-018-23528-7

[…] protein determination with the pierce bca assay and compared to a dilution curve of bsa., the simulation of fig.  are made using a kinetic model of s. cerevisiae glycolysis. the model is available on jws online under the model id vanheerden1. we obtained the steady state flux for a given km of the transporter and extracellular substrate concentration by first running a time simulation for 10000 mi […]

PMCID: 5787704
PMID: 29371237
DOI: 10.15252/msb.20177733

[…] models: biomodels database (www.ebi.ac.uk/biomodels-main, model1712050001 – model17120500012).sed‐ml scripts and simulations reproducing figs c–h and a: jws online simulation database (https://jjj.bio.vu.nl/models/experiments/?id=strasen2018). , unprocessed single‐cell data: dryad digital repository (https://doi.org/10.5061/dryad.hc5dp)., […]

PMCID: 5397069
PMID: 28369071
DOI: 10.1371/journal.pcbi.1005461

[…] may be promising drug targets., all analyses were done with the computational model of as published in van eunen k et al. plos comput biol. 2013;9(8):2–9. this model is publically available at jws online cellular systems modeling (https://jjj.bio.vu.nl/models/vaneunen6)., the mitochondrial fatty-acid oxidation (mfao) in the liver is of key importance for the production of atp and ketone […]

PMCID: 5293153
PMID: 28123004
DOI: 10.15252/msb.20167258

[…] have been provided as source data for the respective figures., the models are provided in sbml code as (baf3‐epor), (mcfu‐e), and (32d‐epor). curated model files have also been made available at jws online: https://jjj.bio.vu.nl/models/adlung1/ (baf3‐epor model), https://jjj.bio.vu.nl/models/adlung2/ (mcfu‐e model), and https://jjj.bio.vu.nl/models/adlung3/ (32d‐epor model)., la conducted […]

PMCID: 5199125
PMID: 28007935
DOI: 10.15252/msb.20167087

[…] in sbml code (). see for model parameters, and section ii in for further details of the modelling approach and assumptions., the model is provided in sbml code as and is also available at the jws online model database (https://jjj.bio.vu.nl/models/martins2/)., bmcm, akd and jcwl conceived and designed the study, analysed and interpreted the data, and wrote the article. bmcm and akd […]


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JWS Online institution(s)
Department of Biochemistry, University of Stellenbosch, Matieland, South Africa
JWS Online funding source(s)
Supported by The South African National Bioinformatics Network (NBN), the National Research Foundation, specifically the South African Research Chairs Initiative (SARChI) and the Biotechnology and Biological Sciences Research Council (BBSRC).

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