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JWS Online specifications


Unique identifier OMICS_08770
Name JWS Online
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline JWS Online Team

Publications for JWS Online

JWS Online citations


Low affinity uniporter carrier proteins can increase net substrate uptake rate by reducing efflux

Sci Rep
PMCID: 5883050
PMID: 29615663
DOI: 10.1038/s41598-018-23528-7

[…] The simulation of Fig.  are made using a kinetic model of S. cerevisiae glycolysis. The model is available on JWS online under the model ID vanHeerden1. We obtained the steady state flux for a given KM of the transporter and extracellular substrate concentration by first running a time simulation for 10000 mi […]


Cell‐specific responses to the cytokine TGFβ are determined by variability in protein levels

Mol Syst Biol
PMCID: 5787704
PMID: 29371237
DOI: 10.15252/msb.20177733

[…] ps://doi.org/10.5061/dryad.hc5dp).Mathematical models: BioModels Database (www.ebi.ac.uk/biomodels-main, MODEL1712050001 – MODEL17120500012).SED‐ML scripts and simulations reproducing Figs C–H and A: JWS Online Simulation Database (https://jjj.bio.vu.nl/models/experiments/?id=strasen2018). Unprocessed single‐cell data: Dryad Digital Repository (https://doi.org/10.5061/dryad.hc5dp).Mathematical mod […]


The Peculiar Glycolytic Pathway in Hyperthermophylic Archaea: Understanding Its Whims by Experimentation In Silico

Int J Mol Sci
PMCID: 5412457
PMID: 28425930
DOI: 10.3390/ijms18040876
call_split See protocol

[…] ons of boundary metabolites have been fixed to in vivo concentrations in S. cerevisiae []. All rate equations and parameters are shown in . The model files can be found in and will be available from JWS-online (available online: https://jjj.bio.vu.nl/) upon acceptance for publication. We used Copasi (COPASI 4.16, available online: http://copasi.org/News/2015/08/19/Release/) throughout for the mod […]


Protein abundance of AKT and ERK pathway components governs cell type‐specific regulation of proliferation

Mol Syst Biol
PMCID: 5293153
PMID: 28123004
DOI: 10.15252/msb.20167258

[…] ots have been provided as Source Data for the respective figures.The models are provided in SBML code as (BaF3‐EpoR), (mCFU‐E), and (32D‐EpoR). Curated model files have also been made available at JWS online: https://jjj.bio.vu.nl/models/adlung1/ (BaF3‐EpoR model), https://jjj.bio.vu.nl/models/adlung2/ (mCFU‐E model), and https://jjj.bio.vu.nl/models/adlung3/ (32D‐EpoR model). […]


Frequency doubling in the cyanobacterial circadian clock

Mol Syst Biol
PMCID: 5199125
PMID: 28007935
DOI: 10.15252/msb.20167087

[…] The model is provided in SBML code as and is also available at the JWS Online model database (https://jjj.bio.vu.nl/models/martins2/). […]


Living on the edge: substrate competition explains loss of robustness in mitochondrial fatty acid oxidation disorders

BMC Biol
PMCID: 5142382
PMID: 27927213
DOI: 10.1186/s12915-016-0327-5

[…] or analyzed during this study are included in this published article and its supplementary information files. The previously published model of fatty-acid oxidation in rat [] is available through the JWS online database (http://jjj.biochem.sun.ac.za/models/vaneunen6). All mouse and human model files are in the supplemental material (Additional file : Model S5, Additional file : Figure S7, Addition […]


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JWS Online institution(s)
Department of Biochemistry, University of Stellenbosch, Matieland, South Africa
JWS Online funding source(s)
Supported by The South African National Bioinformatics Network (NBN), the National Research Foundation, specifically the South African Research Chairs Initiative (SARChI) and the Biotechnology and Biological Sciences Research Council (BBSRC).

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