kpLogo specifications

Unique identifier:
OMICS_15307
Interface:
Web user interface
Input data:
DNA, RNA, protein and other arbitrary types of sequences in FASTA or Tabular format.
Output data:
The sequence logo plots (frequency, information content, probability, k-mer, fixed positions, stacking order), the tabular data file.
Computer skills:
Basic
Maintained:
Yes
Name:
k-mer probability logo
Restrictions to use:
None
Input format:
FASTA
Programming languages:
C++, Shell (Bash)
Stability:
Stable

kpLogo distribution

download

kpLogo specifications

Unique identifier:
OMICS_15307
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Version:
1.0
Requirements:
GCC, ImageMagick, Ghostscript
Name:
k-mer probability logo
Interface:
Command line interface
Input data:
DNA, RNA, protein and other arbitrary types of sequences in FASTA or Tabular format.
Output data:
The sequence logo plots (frequency, information content, probability, k-mer, fixed positions, stacking order), the tabular data file.
Programming languages:
C++, Shell (Bash)
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

kpLogo distribution

download

kpLogo support

Documentation

Maintainer

  • Xuebing Wu <>
  • Xuebing Wu <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Howard Hughes Medical Institute and Whitehead Institute for Biomedical Research, Cambridge, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools