KAGIANA specifications


Unique identifier OMICS_21226
Alternative name Kazusa Arabidopsis Gene Information And Network Analysis
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Maintained Yes


  • person_outline Daisuke Shibata

Publication for Kazusa Arabidopsis Gene Information And Network Analysis

KAGIANA citations


Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana

BMC Plant Biol
PMCID: 2666732
PMID: 19309492
DOI: 10.1186/1471-2229-9-32

[…] Co-expression gene analysis was carried out using KAGIANA software, which allows for the identification of co-expressed genes among gene groups, based on correlation coefficients from publicly available microarray data derived from the ATTED-II datab […]


SVD based Anatomy of Gene Expressions for Correlation Analysis in Arabidopsis thaliana

PMCID: 2608847
PMID: 18931094
DOI: 10.1093/dnares/dsn025

[…] (TAIR), and the Nottingham Arabidopsis Stock Centre Arrays (NASC). Also available are the functional prediction tools based on gene co-expression, such as [email protected], Genevestigator, ATTED-II and KAGIANA. Most of the prediction tools measure similarity of co-expression by Pearson’s or Spearman’s rank correlation with P-value across various biological and experimental conditions. Such similarit […]

KAGIANA institution(s)
Kazusa DNA Research Institute, Chiba, Japan; Graduate School of Pharmaceutical Science, Chiba University, Chiba, Japan
KAGIANA funding source(s)
Supported by The New Energy and Industrial Technology Development (NEDO) program, part of the ‘Development of Fundamental Technologies for Controlling the Material Production Process of Plants’ project.

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