Kalign specifications


Unique identifier OMICS_00978
Name Kalign
Interface Web user interface, Application programming interface
Restrictions to use None
Input data Protein or nucleic acid sequences
Input format GCG, FASTA, EMBL, GenBank, PIR, NBRF, PHYLIP, UniProtKB/Swiss-Prot
Output data Sequence alignment
Output format FASTA, MACSIM, ClustalW
Programming languages C
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Timo Lassmann <>

Kalign citation

PMCID: 5472674

[…] of the dpol and the tk genes of bohv-4-fmv were used as the query sequence. dna sequences were then translated with transeq (38), and the multiple protein sequence alignment was performed with kalign2 (39). the alignment was manually validated and corrected with seaview (40). this allowed to align the nucleotide sequences with tranalign software (38). nucleotide sites for the phylogeny […]

Kalign institution(s)
Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden

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