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- Software type:
- Restrictions to use:
- Input format:
- FASTQ, FASTA
- Programming languages:
- Command line interface
- Input data:
- reference sequences, taxonomy with labels corresponding to the references
- Operating system:
- Computer skills:
(Reppell and Novembre, 2017) Using pseudoalignment and base quality to accurately quantify microbial community composition. bioRxiv.
Department of Human Genetics, University of Chicago, Chicago, IL, USA
This work was supported by NIH/NHGRI R01 HG007089.
Link to literature
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