Kart statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Kart
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Kart specifications

Information


Unique identifier OMICS_20806
Name Kart
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Version 2.2.6
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Wen-Lian Hsu

Publication for Kart

Kart citations

 (3)
library_books

Performance evaluation method for read mapping tool in clinical panel sequencing

2017
PMCID: 5846869
PMID: 29568413
DOI: 10.1007/s13258-017-0621-9

[…] 2 using position-specific scoring matrices for high divergent reads such as ancient DNA, CUSHAW3 (Liu et al. ) scoring higher sensitivity compared to BWA–MEM, Bowtie 2 and NovoAlign for short reads, Kart (Lin and Hsu ) reducing the runtime to about 3–100 times compared to BWA–MEM and Bowtie 2 with both short and long reads, and NextGenMap (Sedlazeck et al. ) showing shorter runtime and higher per […]

library_books

DART: a fast and accurate RNA seq mapper with a partitioning strategy

2017
Bioinformatics
PMCID: 5860201
PMID: 28968831
DOI: 10.1093/bioinformatics/btx558

[…] ed a novel RNA-Seq mapping algorithm, call DART (Division based Alignment for RNA-Seq Transcripts) to handle spliced alignment without any annotation guidance. It is derived from our DNA read mapper, Kart (). DART adopts a partitioning strategy to handle RNA-Seq transcript alignments. Unlike most of read aligners that try to extend a seed in both directions with a dynamic programming step, DART di […]

library_books

Kart: a divide and conquer algorithm for NGS read alignment

2017
Bioinformatics
PMCID: 5860120
PMID: 28379292
DOI: 10.1093/bioinformatics/btx189

[…] Kart was developed under Linux 64-bit environment and implemented with standard C/C ++. It supports multi-thread to take advantage of multi-core computers. Kart reads a BWT-based indexing file and a r […]


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Kart institution(s)
Institute of Information Science, Academia Sinica, Taipei, Taiwan
Kart funding source(s)
Supported by Bioinformatics Core Facility for Translational Medicine and Biotechnology Development, MOST105-2319-B-400-002.

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